Wall clock time and date at job start Mon Mar 30 2020 02:45:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 119.99710 * 2 1
4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1
5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1
6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1
7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3
8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1
9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1
10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2
11 11 H 1.08998 * 109.46715 * 304.99131 * 10 9 7
12 12 O 1.42898 * 109.47462 * 64.99633 * 10 9 7
13 13 C 1.50701 * 109.46676 * 184.99784 * 10 9 7
14 14 N 1.30171 * 125.61731 * 284.68819 * 13 10 9
15 15 C 1.34782 * 108.72289 * 179.84689 * 14 13 10
16 16 C 1.34075 * 107.59486 * 0.41469 * 15 14 13
17 17 O 1.33902 * 125.61946 * 105.00147 * 13 10 9
18 18 C 1.51232 * 110.52152 * 179.75070 * 16 15 14
19 19 C 1.54475 * 104.93487 * 16.81745 * 18 16 15
20 20 C 1.51322 * 142.00444 * 180.02562 * 15 14 13
21 21 H 0.97000 * 120.00236 * 180.02562 * 1 2 3
22 22 H 1.09004 * 109.46434 * 299.99667 * 9 7 2
23 23 H 1.08993 * 109.47348 * 59.99490 * 9 7 2
24 24 H 0.96702 * 114.00245 * 59.99635 * 12 10 9
25 25 H 1.08997 * 110.34273 * 135.68954 * 18 16 15
26 26 H 1.09001 * 110.34366 * 257.95193 * 18 16 15
27 27 H 1.09000 * 110.95621 * 92.66999 * 19 18 16
28 28 H 1.09002 * 110.95226 * 216.35423 * 19 18 16
29 29 H 1.09001 * 110.34502 * 44.69266 * 20 15 14
30 30 H 1.09001 * 110.34249 * 282.43885 * 20 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 1.2841 2.7465 0.0006
5 1 3.1029 1.6964 1.2125
6 1 3.1028 1.6964 -1.2125
7 6 2.0045 -1.1940 -0.0057
8 1 3.0845 -1.1940 -0.0103
9 6 1.2510 -2.4992 -0.0059
10 6 2.2453 -3.6621 -0.0121
11 1 2.9262 -3.5533 -0.8563
12 8 2.9922 -3.6568 1.2061
13 6 1.4954 -4.9634 -0.1360
14 7 0.8221 -5.5438 0.8148
15 6 0.2872 -6.6832 0.3328
16 6 0.6600 -6.7949 -0.9502
17 8 1.4169 -5.7160 -1.2407
18 6 0.0979 -8.0608 -1.5573
19 6 -1.0271 -8.4991 -0.5936
20 6 -0.5700 -7.8627 0.7377
21 1 -0.4850 -0.8400 0.0004
22 1 0.6281 -2.5591 0.8866
23 1 0.6207 -2.5548 -0.8933
24 1 2.4493 -3.7500 2.0008
25 1 -0.3092 -7.8576 -2.5478
26 1 0.8692 -8.8289 -1.6139
27 1 -1.9894 -8.0955 -0.9085
28 1 -1.0698 -9.5852 -0.5127
29 1 -1.4326 -7.5249 1.3121
30 1 0.0163 -8.5760 1.3170
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261039198.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:17
Heat of formation + Delta-G solvation = -28.451315 kcal
Electronic energy + Delta-G solvation = -14943.687861 eV
Core-core repulsion = 12319.674775 eV
Total energy + Delta-G solvation = -2624.013086 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 223.100 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-43.16239 -37.45843 -36.73771 -33.83679 -33.24012 -30.13348 -28.19717 -27.62828
-24.80196 -22.51575 -21.17015 -20.82768 -20.41222 -17.47797 -16.61450 -16.44205
-15.69065 -15.09525 -14.70103 -14.28776 -13.82345 -13.66723 -13.13696 -12.72539
-12.03730 -11.94090 -11.55388 -11.46980 -11.44620 -11.31047 -10.77755 -10.60734
-10.48480 -10.09747 -10.08200 -9.53245 -8.71045 -8.38685 -8.19551 -6.40295
-4.10465 1.68854 2.51620 2.91724 3.45560 3.47903 3.66476 3.85568
4.46465 4.55704 4.62689 4.71835 4.99757 5.10555 5.36244 5.38475
5.42664 5.45405 5.56324 5.65003 5.88672 5.97033 6.04982 6.17753
6.26739 6.59918 7.07212 7.23761 8.00532 8.05284 8.21221 8.43007
8.80998 9.61000 11.00072
Molecular weight = 223.10amu
Principal moments of inertia in cm(-1)
A = 0.055255 B = 0.006026 C = 0.005873
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 506.617740 B = 4645.764757 C = 4766.643938
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.016 3.984
3 Si 1.073 2.927
4 H -0.283 1.283
5 H -0.286 1.286
6 H -0.287 1.287
7 C -0.596 4.596
8 H 0.059 0.941
9 C -0.008 4.008
10 C 0.214 3.786
11 H 0.117 0.883
12 O -0.534 6.534
13 C 0.188 3.812
14 N -0.474 5.474
15 C -0.034 4.034
16 C -0.100 4.100
17 O -0.185 6.185
18 C -0.018 4.018
19 C -0.115 4.115
20 C -0.037 4.037
21 H 0.268 0.732
22 H 0.023 0.977
23 H 0.019 0.981
24 H 0.380 0.620
25 H 0.083 0.917
26 H 0.089 0.911
27 H 0.081 0.919
28 H 0.091 0.909
29 H 0.082 0.918
30 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.887 -16.215 -1.652 16.323
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.188 4.188
3 Si 0.901 3.099
4 H -0.208 1.208
5 H -0.213 1.213
6 H -0.213 1.213
7 C -0.634 4.634
8 H 0.077 0.923
9 C -0.046 4.046
10 C 0.153 3.847
11 H 0.135 0.865
12 O -0.339 6.339
13 C -0.019 4.019
14 N -0.203 5.203
15 C -0.154 4.154
16 C -0.154 4.154
17 O -0.072 6.072
18 C -0.056 4.056
19 C -0.152 4.152
20 C -0.075 4.075
21 H 0.078 0.922
22 H 0.041 0.959
23 H 0.037 0.963
24 H 0.228 0.772
25 H 0.101 0.899
26 H 0.108 0.892
27 H 0.100 0.900
28 H 0.109 0.891
29 H 0.100 0.900
30 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -0.605 -14.241 -1.478 14.330
hybrid contribution -0.218 -1.983 -0.338 2.024
sum -0.823 -16.225 -1.817 16.347
Atomic orbital electron populations
1.70793 1.06939 1.30570 1.46359 1.25907 0.96456 1.02834 0.93584
0.83478 0.74791 0.74945 0.76670 1.20822 1.21260 1.21340 1.21867
0.94690 0.90764 1.56072 0.92307 1.19898 0.94424 0.92505 0.97757
1.20598 0.92978 0.82242 0.88862 0.86539 1.86523 1.36757 1.95236
1.15349 1.28491 0.98424 0.96726 0.78282 1.69705 1.12057 1.06915
1.31590 1.22328 1.03595 0.96122 0.93328 1.23730 1.00502 0.92604
0.98556 1.84220 1.55383 1.27939 1.39662 1.20571 0.97198 0.88346
0.99454 1.22468 0.98015 1.01190 0.93571 1.20431 0.97781 0.91498
0.97781 0.92202 0.95881 0.96272 0.77195 0.89852 0.89242 0.90008
0.89064 0.89967 0.89738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -28.08 13.65 55.43 0.76 -27.33 16
2 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16
3 Si 1.07 25.41 29.90 -169.99 -5.08 20.33 16
4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16
6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16
7 C -0.60 -16.97 8.88 -34.44 -0.31 -17.27 16
8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16
9 C -0.01 -0.21 3.95 -27.88 -0.11 -0.32 16
10 C 0.21 4.76 3.46 -27.88 -0.10 4.66 16
11 H 0.12 2.49 8.14 -51.93 -0.42 2.07 16
12 O -0.53 -11.57 13.08 -35.23 -0.46 -12.03 16
13 C 0.19 3.98 7.22 -12.98 -0.09 3.88 16
14 N -0.47 -9.82 11.18 -7.18 -0.08 -9.90 16
15 C -0.03 -0.58 7.98 -82.46 -0.66 -1.24 16
16 C -0.10 -1.67 8.24 -35.51 -0.29 -1.96 16
17 O -0.18 -3.68 10.78 4.97 0.05 -3.62 16
18 C -0.02 -0.19 6.79 -26.85 -0.18 -0.37 16
19 C -0.11 -0.97 7.14 -25.18 -0.18 -1.14 16
20 C -0.04 -0.43 6.79 -26.80 -0.18 -0.61 16
21 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16
22 H 0.02 0.63 8.01 -51.93 -0.42 0.21 16
23 H 0.02 0.52 8.00 -51.93 -0.42 0.11 16
24 H 0.38 7.45 8.93 45.56 0.41 7.86 16
25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16
27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
LS Contribution 262.73 15.07 3.96 3.96
Total: -1.00 -33.72 262.73 -5.93 -39.66
By element:
Atomic # 1 Polarization: 5.82 SS G_CDS: -2.88 Total: 2.94 kcal
Atomic # 6 Polarization: -11.81 SS G_CDS: -2.20 Total: -14.01 kcal
Atomic # 7 Polarization: -37.90 SS G_CDS: 0.68 Total: -37.23 kcal
Atomic # 8 Polarization: -15.24 SS G_CDS: -0.41 Total: -15.65 kcal
Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -33.72 -5.93 -39.66 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261039198.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.206 kcal
(2) G-P(sol) polarization free energy of solvation -33.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.517 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.451 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds