Wall clock time and date at job start Mon Mar 30 2020 02:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00069 * 2 1 4 4 H 1.48508 * 109.47272 * 240.00013 * 3 2 1 5 5 H 1.48501 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47342 * 119.99832 * 3 2 1 7 7 C 1.37877 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99727 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46608 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47597 * 55.00217 * 10 9 7 12 12 O 1.42902 * 109.47297 * 294.99788 * 10 9 7 13 13 C 1.50701 * 109.46889 * 175.00245 * 10 9 7 14 14 N 1.30174 * 125.62070 * 255.00385 * 13 10 9 15 15 C 1.34784 * 108.72630 * 180.02562 * 14 13 10 16 16 C 1.34071 * 107.59118 * 359.97438 * 15 14 13 17 17 O 1.33906 * 125.61716 * 74.79088 * 13 10 9 18 18 C 1.51236 * 110.52001 * 180.02562 * 16 15 14 19 19 C 1.54481 * 104.93251 * 16.82032 * 18 16 15 20 20 C 1.51318 * 142.00382 * 180.02562 * 15 14 13 21 21 H 0.97005 * 120.00055 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46880 * 60.00457 * 9 7 2 23 23 H 1.08994 * 109.47116 * 300.00027 * 9 7 2 24 24 H 0.96692 * 114.00137 * 300.00859 * 12 10 9 25 25 H 1.09002 * 110.34478 * 135.68345 * 18 16 15 26 26 H 1.09002 * 110.34636 * 257.95135 * 18 16 15 27 27 H 1.09003 * 110.95637 * 92.67013 * 19 18 16 28 28 H 1.09011 * 110.95096 * 216.35278 * 19 18 16 29 29 H 1.09005 * 110.34337 * 44.27424 * 20 15 14 30 30 H 1.08995 * 110.34881 * 282.00972 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 1 2.9294 -3.5552 0.8413 12 8 2.9875 -3.6541 -1.2216 13 6 1.4958 -4.9636 0.1232 14 7 1.4234 -5.6977 1.1958 15 6 0.6698 -6.7826 0.9276 16 6 0.2757 -6.6961 -0.3510 17 8 0.7915 -5.5536 -0.8509 18 6 -0.5794 -7.8865 -0.7238 19 6 -1.0119 -8.5039 0.6246 20 6 0.1245 -8.0426 1.5637 21 1 -0.4850 0.8401 -0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 2.4416 -3.7455 -2.0144 25 1 -1.4528 -7.5632 -1.2901 26 1 0.0025 -8.6054 -1.3006 27 1 -1.9720 -8.1013 0.9477 28 1 -1.0490 -9.5915 0.5614 29 1 -0.2691 -7.8260 2.5568 30 1 0.9014 -8.8050 1.6211 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261039200.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:19 Heat of formation + Delta-G solvation = -24.858937 kcal Electronic energy + Delta-G solvation = -14915.408929 eV Core-core repulsion = 12291.551621 eV Total energy + Delta-G solvation = -2623.857309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.08276 -37.44700 -36.49139 -33.94189 -32.94663 -30.19882 -28.15918 -27.75880 -25.04293 -22.31812 -21.35428 -20.84865 -20.00024 -17.25717 -16.52840 -16.23085 -15.55292 -15.09971 -14.61712 -14.50359 -13.80301 -13.60353 -13.06766 -12.60592 -12.32145 -11.87038 -11.41830 -11.38661 -11.26035 -11.05775 -10.89521 -10.64135 -10.46424 -10.27625 -10.00925 -9.31818 -9.28508 -8.44494 -8.12731 -6.06710 -4.09915 1.77295 2.61528 2.99042 3.34056 3.37471 3.41111 3.91499 4.42201 4.57306 4.67636 4.77403 5.08600 5.14381 5.31426 5.42271 5.48048 5.51523 5.59993 5.71634 5.94073 6.06573 6.23050 6.30020 6.36797 6.65754 7.39175 7.44510 7.89099 8.08887 8.19763 8.28246 8.95328 9.54180 11.04779 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.055211 B = 0.006007 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.021445 B = 4660.495708 C = 4786.363216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.000 4.000 10 C 0.206 3.794 11 H 0.132 0.868 12 O -0.545 6.545 13 C 0.194 3.806 14 N -0.476 5.476 15 C -0.036 4.036 16 C -0.099 4.099 17 O -0.184 6.184 18 C -0.018 4.018 19 C -0.115 4.115 20 C -0.037 4.037 21 H 0.263 0.737 22 H 0.026 0.974 23 H 0.033 0.967 24 H 0.375 0.625 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -15.662 -0.844 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.083 0.917 9 C -0.038 4.038 10 C 0.146 3.854 11 H 0.149 0.851 12 O -0.348 6.348 13 C -0.013 4.013 14 N -0.206 5.206 15 C -0.156 4.156 16 C -0.153 4.153 17 O -0.071 6.071 18 C -0.056 4.056 19 C -0.153 4.153 20 C -0.074 4.074 21 H 0.072 0.928 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.222 0.778 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.400 -15.292 0.087 15.356 hybrid contribution -0.444 0.815 -0.955 1.332 sum -1.844 -14.477 -0.867 14.620 Atomic orbital electron populations 1.69966 1.06164 1.27035 1.50314 1.25015 0.94877 0.99479 0.95026 0.86522 0.79434 0.82460 0.78813 1.20063 1.21332 1.20061 1.20994 0.93382 0.89736 1.51268 0.91685 1.19822 0.93903 0.91160 0.98906 1.21042 0.92981 0.82734 0.88654 0.85064 1.86544 1.37188 1.95637 1.15444 1.28453 0.94250 0.98179 0.80424 1.69798 1.19437 1.03697 1.27623 1.22320 1.01051 0.97219 0.94981 1.23702 1.05116 0.90568 0.95920 1.84187 1.52074 1.29319 1.41531 1.20565 0.96993 0.89289 0.98746 1.22471 0.98696 1.01010 0.93089 1.20418 0.97036 0.90863 0.99130 0.92772 0.95538 0.94911 0.77798 0.89844 0.89309 0.90022 0.89135 0.90019 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.45 8.88 -34.44 -0.31 -14.76 16 8 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 9 C 0.00 0.00 4.64 -27.88 -0.13 -0.13 16 10 C 0.21 4.54 3.46 -27.88 -0.10 4.44 16 11 H 0.13 2.87 8.14 -51.93 -0.42 2.44 16 12 O -0.54 -11.31 13.08 -35.67 -0.47 -11.78 16 13 C 0.19 4.12 7.19 -12.98 -0.09 4.03 16 14 N -0.48 -10.03 11.30 -7.18 -0.08 -10.11 16 15 C -0.04 -0.63 7.98 -82.46 -0.66 -1.28 16 16 C -0.10 -1.67 8.24 -35.51 -0.29 -1.97 16 17 O -0.18 -3.66 10.76 4.51 0.05 -3.61 16 18 C -0.02 -0.20 6.79 -26.84 -0.18 -0.38 16 19 C -0.11 -0.99 7.14 -25.18 -0.18 -1.17 16 20 C -0.04 -0.43 6.79 -26.81 -0.18 -0.61 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.37 6.67 9.02 45.56 0.41 7.08 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 264.21 15.07 3.98 3.98 Total: -1.00 -33.18 264.21 -5.95 -39.13 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -2.93 Total: 2.07 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -2.22 Total: -10.29 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.66 Total: -36.15 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.42 Total: -15.39 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.18 -5.95 -39.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261039200.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.273 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds