Wall clock time and date at job start Mon Mar 30 2020 02:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30481 * 1 3 3 Si 1.86811 * 119.99807 * 2 1 4 4 H 1.48495 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46790 * 299.99533 * 3 2 1 6 6 H 1.48500 * 109.46961 * 59.99253 * 3 2 1 7 7 C 1.40580 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.39856 * 119.99659 * 0.02562 * 7 2 1 10 10 N 1.30834 * 127.62428 * 0.02562 * 9 7 2 11 11 O 1.20035 * 116.12087 * 179.74274 * 10 9 7 12 12 C 1.34442 * 114.81535 * 0.02562 * 11 10 9 13 13 O 1.20833 * 128.09643 * 180.02562 * 12 11 10 14 14 C 1.52212 * 127.61325 * 179.70354 * 9 7 2 15 15 H 1.08997 * 111.21440 * 298.06561 * 14 9 7 16 16 C 1.52999 * 111.21262 * 62.45091 * 14 9 7 17 17 C 1.54263 * 110.02750 * 297.16169 * 16 14 9 18 18 C 1.54898 * 104.19697 * 217.10234 * 17 16 14 19 19 C 1.54889 * 102.74162 * 37.94684 * 18 17 16 20 20 C 1.53873 * 110.03355 * 179.97438 * 16 14 9 21 21 H 0.96998 * 120.00385 * 0.02562 * 1 2 3 22 22 H 1.09001 * 110.02031 * 58.60218 * 16 14 9 23 23 H 1.08995 * 110.49241 * 335.78215 * 17 16 14 24 24 H 1.09001 * 110.48788 * 98.43100 * 17 16 14 25 25 H 1.08991 * 110.75380 * 279.63295 * 18 17 16 26 26 H 1.09001 * 110.75509 * 156.25992 * 18 17 16 27 27 H 1.09004 * 110.48073 * 203.37955 * 19 18 17 28 28 H 1.08998 * 110.48798 * 80.73871 * 19 18 17 29 29 H 1.08999 * 110.03273 * 238.56670 * 20 16 14 30 30 H 1.09002 * 110.03444 * 0.02562 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3048 0.0000 0.0000 3 14 2.2388 1.6179 0.0000 4 1 3.6988 1.3465 0.0006 5 1 1.8801 2.3964 -1.2125 6 1 1.8799 2.3966 1.2124 7 6 2.0078 -1.2174 0.0005 8 1 3.0878 -1.2173 0.0001 9 6 1.3085 -2.4286 0.0005 10 7 0.0117 -2.6022 -0.0004 11 8 -0.3691 -3.7405 -0.0050 12 6 0.6092 -4.6628 -0.0080 13 8 0.4993 -5.8661 -0.0131 14 6 1.8882 -3.8360 -0.0052 15 1 2.4768 -4.0165 -0.9046 16 6 2.7142 -4.0996 1.2555 17 6 3.9224 -3.1418 1.3053 18 6 5.0648 -4.0020 1.9005 19 6 4.8224 -5.3877 1.2522 20 6 3.2859 -5.5278 1.2220 21 1 -0.4850 0.8400 -0.0004 22 1 2.0945 -3.9665 2.1422 23 1 4.1826 -2.8033 0.3024 24 1 3.7086 -2.2913 1.9526 25 1 4.9778 -4.0625 2.9852 26 1 6.0380 -3.6052 1.6114 27 1 5.2652 -6.1762 1.8608 28 1 5.2279 -5.4119 0.2408 29 1 2.9444 -6.0872 2.0929 30 1 2.9753 -6.0330 0.3074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046464.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:30 Heat of formation + Delta-G solvation = -31.796068 kcal Electronic energy + Delta-G solvation = -15651.365226 eV Core-core repulsion = 13027.207101 eV Total energy + Delta-G solvation = -2624.158125 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.21008 -38.01627 -36.98245 -34.30651 -32.10180 -29.38770 -28.34223 -26.67995 -26.06054 -21.74949 -20.81011 -19.77775 -19.31804 -17.27226 -16.32775 -15.92872 -15.32873 -14.94182 -14.54605 -13.94655 -13.61659 -12.93738 -12.83005 -12.26110 -12.16401 -11.60670 -11.39885 -11.19883 -11.12054 -10.77280 -10.75013 -10.45395 -10.33836 -10.20990 -10.05947 -9.65697 -9.60100 -8.03030 -7.90253 -6.78789 -4.73834 2.64021 2.98777 3.01135 3.05072 3.81776 3.94342 4.59599 4.88813 4.97075 5.04141 5.19058 5.30540 5.60334 5.69459 5.82778 5.93507 5.97838 6.02856 6.16977 6.20311 6.26346 6.46078 6.49545 6.63409 6.71880 6.78371 6.91621 7.10378 8.07446 8.38124 8.41719 8.64020 10.12157 10.84586 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.011721 C = 0.008273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.117416 B = 2388.210984 C = 3383.694989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.410 4.410 8 H 0.097 0.903 9 C 0.165 3.835 10 N -0.429 5.429 11 O -0.059 6.059 12 C 0.388 3.612 13 O -0.489 6.489 14 C -0.161 4.161 15 H 0.114 0.886 16 C -0.049 4.049 17 C -0.109 4.109 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.122 4.122 21 H 0.282 0.718 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.040 -1.307 2.132 9.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.159 4.159 3 Si 0.738 3.262 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.448 4.448 8 H 0.115 0.885 9 C 0.010 3.990 10 N -0.175 5.175 11 O -0.096 6.096 12 C 0.230 3.770 13 O -0.377 6.377 14 C -0.183 4.183 15 H 0.131 0.869 16 C -0.068 4.068 17 C -0.147 4.147 18 C -0.165 4.165 19 C -0.160 4.160 20 C -0.160 4.160 21 H 0.093 0.907 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.733 -1.357 2.129 8.135 hybrid contribution 1.024 0.331 -0.084 1.080 sum 8.758 -1.026 2.045 9.051 Atomic orbital electron populations 1.69783 1.07513 1.29153 1.29567 1.26072 0.94898 1.01270 0.93666 0.86139 0.80674 0.80634 0.78728 1.18138 1.19742 1.19721 1.18715 0.94549 0.87415 1.44159 0.88476 1.22090 0.88718 0.91606 0.96563 1.73223 1.13847 0.92085 1.38350 1.85010 1.36197 1.11688 1.76695 1.25718 0.88285 0.88692 0.74305 1.90526 1.86586 1.11581 1.49050 1.22171 0.96916 0.98157 1.01058 0.86852 1.21219 0.95807 0.94654 0.95134 1.22450 0.92937 0.97456 1.01817 1.22553 0.98625 0.95580 0.99776 1.22364 0.96136 0.97105 1.00407 1.22264 0.94740 0.96580 1.02417 0.90707 0.91346 0.90763 0.90752 0.91948 0.91944 0.92328 0.91914 0.92202 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.99 12.03 55.58 0.67 -18.32 16 2 C 0.07 1.58 5.51 -17.24 -0.09 1.48 16 3 Si 0.91 17.32 29.57 -169.99 -5.03 12.29 16 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.41 -9.78 8.44 -38.09 -0.32 -10.10 16 8 H 0.10 2.07 5.85 -52.49 -0.31 1.77 16 9 C 0.16 4.13 6.44 -81.66 -0.53 3.61 16 10 N -0.43 -11.92 10.07 34.05 0.34 -11.57 16 11 O -0.06 -1.59 10.98 -7.78 -0.09 -1.67 16 12 C 0.39 9.44 8.38 36.80 0.31 9.75 16 13 O -0.49 -12.18 17.02 -18.17 -0.31 -12.49 16 14 C -0.16 -3.49 2.34 -91.38 -0.21 -3.71 16 15 H 0.11 2.31 8.14 -51.93 -0.42 1.89 16 16 C -0.05 -0.91 2.53 -89.50 -0.23 -1.14 16 17 C -0.11 -1.78 4.58 -25.07 -0.11 -1.89 16 18 C -0.13 -1.70 6.91 -24.73 -0.17 -1.87 16 19 C -0.12 -1.65 6.83 -25.05 -0.17 -1.82 16 20 C -0.12 -2.01 6.00 -25.59 -0.15 -2.16 16 21 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 22 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 23 H 0.07 1.23 6.72 -51.93 -0.35 0.88 16 24 H 0.07 1.25 7.98 -51.93 -0.41 0.83 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.25 6.91 -51.93 -0.36 0.89 16 LS Contribution 251.67 15.07 3.79 3.79 Total: -1.00 -28.42 251.67 -5.82 -34.24 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -3.52 Total: 1.57 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -1.68 Total: -7.84 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 1.01 Total: -29.89 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.39 Total: -14.16 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.42 -5.82 -34.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046464.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.448 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds