Wall clock time and date at job start Mon Mar 30 2020 02:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30481 * 1 3 3 Si 1.86811 * 119.99807 * 2 1 4 4 H 1.48495 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46790 * 299.99533 * 3 2 1 6 6 H 1.48500 * 109.46961 * 59.99253 * 3 2 1 7 7 C 1.40580 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.39856 * 119.99659 * 0.02562 * 7 2 1 10 10 N 1.30834 * 127.62428 * 0.02562 * 9 7 2 11 11 O 1.20035 * 116.12087 * 179.74274 * 10 9 7 12 12 C 1.34442 * 114.81535 * 0.02562 * 11 10 9 13 13 O 1.20833 * 128.09643 * 180.02562 * 12 11 10 14 14 C 1.52212 * 127.61325 * 179.70354 * 9 7 2 15 15 H 1.08997 * 111.21440 * 298.06561 * 14 9 7 16 16 C 1.52999 * 111.21262 * 62.45091 * 14 9 7 17 17 C 1.54263 * 110.02750 * 297.16169 * 16 14 9 18 18 C 1.54898 * 104.19697 * 217.10234 * 17 16 14 19 19 C 1.54889 * 102.74162 * 37.94684 * 18 17 16 20 20 C 1.53873 * 110.03355 * 179.97438 * 16 14 9 21 21 H 0.96998 * 120.00385 * 0.02562 * 1 2 3 22 22 H 1.09001 * 110.02031 * 58.60218 * 16 14 9 23 23 H 1.08995 * 110.49241 * 335.78215 * 17 16 14 24 24 H 1.09001 * 110.48788 * 98.43100 * 17 16 14 25 25 H 1.08991 * 110.75380 * 279.63295 * 18 17 16 26 26 H 1.09001 * 110.75509 * 156.25992 * 18 17 16 27 27 H 1.09004 * 110.48073 * 203.37955 * 19 18 17 28 28 H 1.08998 * 110.48798 * 80.73871 * 19 18 17 29 29 H 1.08999 * 110.03273 * 238.56670 * 20 16 14 30 30 H 1.09002 * 110.03444 * 0.02562 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3048 0.0000 0.0000 3 14 2.2388 1.6179 0.0000 4 1 3.6988 1.3465 0.0006 5 1 1.8801 2.3964 -1.2125 6 1 1.8799 2.3966 1.2124 7 6 2.0078 -1.2174 0.0005 8 1 3.0878 -1.2173 0.0001 9 6 1.3085 -2.4286 0.0005 10 7 0.0117 -2.6022 -0.0004 11 8 -0.3691 -3.7405 -0.0050 12 6 0.6092 -4.6628 -0.0080 13 8 0.4993 -5.8661 -0.0131 14 6 1.8882 -3.8360 -0.0052 15 1 2.4768 -4.0165 -0.9046 16 6 2.7142 -4.0996 1.2555 17 6 3.9224 -3.1418 1.3053 18 6 5.0648 -4.0020 1.9005 19 6 4.8224 -5.3877 1.2522 20 6 3.2859 -5.5278 1.2220 21 1 -0.4850 0.8400 -0.0004 22 1 2.0945 -3.9665 2.1422 23 1 4.1826 -2.8033 0.3024 24 1 3.7086 -2.2913 1.9526 25 1 4.9778 -4.0625 2.9852 26 1 6.0380 -3.6052 1.6114 27 1 5.2652 -6.1762 1.8608 28 1 5.2279 -5.4119 0.2408 29 1 2.9444 -6.0872 2.0929 30 1 2.9753 -6.0330 0.3074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261046464.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:30 Heat of formation + Delta-G solvation = -47.129337 kcal Electronic energy + Delta-G solvation = -15652.030126 eV Core-core repulsion = 13027.207101 eV Total energy + Delta-G solvation = -2624.823026 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.15825 -39.55604 -38.76160 -36.12726 -33.83953 -31.10910 -29.66285 -28.49791 -27.68295 -23.54304 -22.44696 -21.18906 -20.77953 -19.17709 -18.17696 -17.75862 -16.91760 -16.64783 -15.94436 -15.48390 -15.41137 -14.48695 -14.20926 -14.14038 -13.74653 -13.22608 -12.98985 -12.85894 -12.74585 -12.13671 -11.89213 -11.84720 -11.71436 -11.53049 -11.37761 -11.35197 -11.30363 -9.94474 -9.86126 -8.60850 -6.71014 0.77414 1.44117 1.46642 1.63735 2.08175 2.21674 2.76405 3.18250 3.26779 3.60445 3.79457 3.86682 3.99401 4.35888 4.41830 4.60987 4.71123 4.71718 4.85736 4.90720 4.96323 5.11838 5.17035 5.24850 5.30697 5.43751 5.49737 5.57251 6.22308 6.47446 6.52922 6.73436 8.32596 8.89750 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.011721 C = 0.008273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.117416 B = 2388.210984 C = 3383.694989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.019 3.981 3 Si 0.996 3.004 4 H -0.236 1.236 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.416 4.416 8 H 0.124 0.876 9 C 0.148 3.852 10 N -0.476 5.476 11 O -0.083 6.083 12 C 0.380 3.620 13 O -0.503 6.503 14 C -0.146 4.146 15 H 0.128 0.872 16 C -0.050 4.050 17 C -0.107 4.107 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.120 4.120 21 H 0.288 0.712 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.134 -0.327 2.403 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.203 4.203 3 Si 0.815 3.185 4 H -0.158 1.158 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.455 4.455 8 H 0.142 0.858 9 C -0.004 4.004 10 N -0.227 5.227 11 O -0.117 6.117 12 C 0.223 3.777 13 O -0.392 6.392 14 C -0.167 4.167 15 H 0.146 0.854 16 C -0.069 4.069 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.158 4.158 21 H 0.099 0.901 22 H 0.063 0.937 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.838 -0.411 2.402 11.109 hybrid contribution -0.003 0.044 -0.175 0.180 sum 10.836 -0.367 2.227 11.068 Atomic orbital electron populations 1.69915 1.09804 1.30764 1.30051 1.27242 0.95541 1.05350 0.92124 0.84928 0.80100 0.74943 0.78512 1.15837 1.19613 1.19532 1.19328 0.95901 0.87328 1.42898 0.85836 1.22642 0.88589 0.93559 0.95581 1.73262 1.15605 0.92300 1.41572 1.84933 1.37482 1.12112 1.77184 1.26114 0.89217 0.88545 0.73844 1.90496 1.86997 1.11924 1.49779 1.22203 0.95877 0.95449 1.03198 0.85423 1.21310 0.96100 0.97166 0.92340 1.22422 0.92900 0.97138 1.02006 1.22527 0.98338 0.94564 1.00094 1.22353 0.93312 0.97981 1.01578 1.22234 0.97330 0.94655 1.01598 0.90080 0.93678 0.90711 0.91526 0.91153 0.89456 0.90135 0.90961 0.92253 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -40.72 12.03 21.93 0.26 -40.46 16 2 C 0.02 0.90 5.51 85.46 0.47 1.37 16 3 Si 1.00 33.93 29.57 68.60 2.03 35.95 16 4 H -0.24 -7.18 7.11 99.48 0.71 -6.47 16 5 H -0.27 -9.16 7.11 99.48 0.71 -8.46 16 6 H -0.27 -9.11 7.11 99.48 0.71 -8.40 16 7 C -0.42 -19.51 8.44 23.23 0.20 -19.32 16 8 H 0.12 4.97 5.85 -2.91 -0.02 4.95 16 9 C 0.15 7.54 6.44 43.58 0.28 7.82 16 10 N -0.48 -27.44 10.07 -46.18 -0.47 -27.91 16 11 O -0.08 -4.64 10.98 91.91 1.01 -3.63 16 12 C 0.38 19.07 8.38 71.75 0.60 19.67 16 13 O -0.50 -25.66 17.02 21.39 0.36 -25.30 16 14 C -0.15 -6.36 2.34 -11.29 -0.03 -6.38 16 15 H 0.13 5.14 8.14 -2.39 -0.02 5.12 16 16 C -0.05 -1.82 2.53 -10.07 -0.03 -1.85 16 17 C -0.11 -3.24 4.58 31.67 0.14 -3.09 16 18 C -0.12 -2.68 6.91 31.89 0.22 -2.46 16 19 C -0.11 -2.68 6.83 31.69 0.22 -2.46 16 20 C -0.12 -3.79 6.00 31.33 0.19 -3.60 16 21 H 0.29 13.60 8.29 -92.71 -0.77 12.84 16 22 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.07 2.25 6.72 -2.39 -0.02 2.23 16 24 H 0.07 2.10 7.98 -2.39 -0.02 2.08 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.91 6.91 -2.39 -0.02 1.89 16 Total: -1.00 -62.64 251.67 6.61 -56.03 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 1.15 Total: 15.63 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 2.27 Total: -10.31 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.20 Total: -68.37 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: 1.37 Total: -28.93 kcal Atomic # 14 Polarization: 33.93 SS G_CDS: 2.03 Total: 35.95 kcal Total: -62.64 6.61 -56.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046464.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.897 kcal (2) G-P(sol) polarization free energy of solvation -62.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds