Wall clock time and date at job start Mon Mar 30 2020 03:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.34935 * 116.99796 * 2 1 4 4 O 1.21616 * 120.00299 * 359.97438 * 3 2 1 5 5 C 1.46644 * 119.99696 * 179.97438 * 3 2 1 6 6 C 1.38880 * 125.82135 * 179.97438 * 5 3 2 7 7 C 1.50703 * 126.08175 * 359.97438 * 6 5 3 8 8 C 1.38314 * 107.83375 * 180.25012 * 6 5 3 9 9 C 1.40200 * 107.53707 * 359.63892 * 8 6 5 10 10 C 1.39637 * 126.06616 * 180.17881 * 9 8 6 11 11 H 1.07997 * 120.00454 * 180.21414 * 10 9 8 12 12 C 1.40524 * 119.99551 * 0.21739 * 10 9 8 13 13 N 1.30543 * 119.99988 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99670 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46661 * 90.00211 * 14 12 10 16 16 H 1.48499 * 109.47002 * 209.99623 * 14 12 10 17 17 H 1.48497 * 109.47163 * 330.00425 * 14 12 10 18 18 N 1.37503 * 125.82067 * 0.02562 * 5 3 2 19 19 C 1.46506 * 125.79940 * 359.95543 * 18 5 3 20 20 H 1.09001 * 109.47074 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47251 * 300.00040 * 1 2 3 22 22 H 1.09001 * 109.46875 * 60.00109 * 1 2 3 23 23 H 1.09002 * 109.47152 * 89.99993 * 7 6 5 24 24 H 1.09001 * 109.46980 * 330.00093 * 7 6 5 25 25 H 1.09004 * 109.47113 * 210.00074 * 7 6 5 26 26 H 1.07991 * 126.23182 * 179.77259 * 8 6 5 27 27 H 0.96994 * 119.99416 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.47160 * 90.00330 * 19 18 5 29 29 H 1.09002 * 109.46830 * 210.00411 * 19 18 5 30 30 H 1.09005 * 109.47028 * 330.00027 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0417 1.2023 0.0000 4 8 1.3793 2.2223 -0.0005 5 6 3.5061 1.2790 0.0006 6 6 4.2589 2.4461 0.0001 7 6 3.7164 3.8521 -0.0016 8 6 5.5949 2.0884 -0.0048 9 6 5.6573 0.6878 0.0010 10 6 6.8215 -0.0832 0.0022 11 1 6.7553 -1.1612 0.0034 12 6 8.0792 0.5435 0.0020 13 7 8.1592 1.8465 0.0011 14 14 9.6367 -0.4879 0.0043 15 1 10.0501 -0.7632 -1.3952 16 1 10.7185 0.2507 0.7038 17 1 9.3795 -1.7712 0.7060 18 7 4.3681 0.2077 0.0006 19 6 3.9795 -1.2049 0.0011 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.5848 4.1920 1.0257 24 1 2.7557 3.8703 -0.5162 25 1 4.4164 4.5110 -0.5155 26 1 6.4368 2.7648 -0.0099 27 1 9.0274 2.2790 0.0013 28 1 3.8829 -1.5555 -1.0265 29 1 4.7413 -1.7911 0.5149 30 1 3.0251 -1.3190 0.5152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261101040.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:48 Heat of formation + Delta-G solvation = -57.338227 kcal Electronic energy + Delta-G solvation = -15303.135155 eV Core-core repulsion = 12677.869439 eV Total energy + Delta-G solvation = -2625.265716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.84984 -38.65223 -35.59718 -33.83235 -32.28403 -29.35075 -27.83207 -27.18110 -25.17974 -23.85578 -21.25084 -19.45872 -18.09890 -16.86167 -16.53551 -15.67879 -15.54249 -15.24125 -13.94620 -13.85567 -13.17097 -12.61267 -12.59932 -12.21602 -12.10817 -11.79602 -11.50082 -11.47600 -11.27151 -10.99929 -10.74970 -10.56203 -10.52491 -10.10331 -9.79006 -9.46109 -9.30458 -7.13579 -6.98550 -6.79724 -4.44622 2.43822 2.95994 2.98716 3.02459 3.66104 3.77746 3.96989 4.40607 4.50360 5.21309 5.49574 5.56497 5.74056 5.88005 6.10848 6.18503 6.33759 6.44348 6.51916 6.68852 6.86155 6.96541 7.04672 7.30878 7.54227 7.71494 7.93202 8.10721 8.58286 8.67132 8.82275 9.05178 9.13229 10.06659 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.041852 B = 0.008340 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.867504 B = 3356.556671 C = 3999.674614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.368 6.368 3 C 0.522 3.478 4 O -0.550 6.550 5 C -0.169 4.169 6 C -0.044 4.044 7 C -0.082 4.082 8 C -0.279 4.279 9 C 0.261 3.739 10 C -0.444 4.444 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.778 5.778 14 Si 0.927 3.073 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.262 1.262 18 N -0.479 5.479 19 C 0.097 3.903 20 H 0.088 0.912 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.166 0.834 27 H 0.283 0.717 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 -4.004 0.081 5.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.287 6.287 3 C 0.377 3.623 4 O -0.445 6.445 5 C -0.270 4.270 6 C -0.052 4.052 7 C -0.140 4.140 8 C -0.301 4.301 9 C 0.147 3.853 10 C -0.478 4.478 11 H 0.097 0.903 12 C -0.143 4.143 13 N -0.404 5.404 14 Si 0.751 3.249 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.186 1.186 18 N -0.166 5.166 19 C -0.046 4.046 20 H 0.106 0.894 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.183 0.817 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.732 -3.821 0.084 5.341 hybrid contribution 0.398 -0.549 -0.012 0.678 sum -3.334 -4.370 0.072 5.497 Atomic orbital electron populations 1.22623 0.79240 1.02083 1.01539 1.86244 1.21475 1.34800 1.86170 1.20162 0.87589 0.80441 0.74071 1.90705 1.66027 1.35510 1.52226 1.18244 0.84335 0.87926 1.36503 1.19684 0.93794 0.91912 0.99845 1.20256 1.00343 0.92672 1.00683 1.21896 0.94561 0.94094 1.19505 1.18323 0.81800 0.92627 0.92515 1.18701 0.88857 0.94325 1.45955 0.90320 1.25863 1.00983 0.95197 0.92275 1.69584 1.27033 1.09707 1.34091 0.86002 0.79421 0.80142 0.79333 1.19246 1.19907 1.18574 1.43707 1.05385 1.03783 1.63685 1.21607 1.00781 0.81064 1.01143 0.89385 0.93088 0.93093 0.92936 0.91607 0.92960 0.81749 0.90566 0.93435 0.91382 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.45 101.05 1.06 1.66 16 2 O -0.37 -7.32 7.85 -41.14 -0.32 -7.65 16 3 C 0.52 12.23 7.91 34.12 0.27 12.50 16 4 O -0.55 -13.39 14.50 -19.35 -0.28 -13.67 16 5 C -0.17 -4.28 6.89 -81.69 -0.56 -4.84 16 6 C -0.04 -1.13 6.16 -104.36 -0.64 -1.77 16 7 C -0.08 -1.81 9.79 36.01 0.35 -1.45 16 8 C -0.28 -7.46 9.67 -38.82 -0.38 -7.84 16 9 C 0.26 6.90 6.66 -84.03 -0.56 6.34 16 10 C -0.44 -11.14 8.97 -38.20 -0.34 -11.48 16 11 H 0.08 1.84 7.10 -52.49 -0.37 1.47 16 12 C 0.08 1.83 5.50 -17.24 -0.09 1.74 16 13 N -0.78 -18.99 10.21 55.58 0.57 -18.43 16 14 Si 0.93 17.53 29.56 -169.99 -5.03 12.50 16 15 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 16 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 17 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 18 N -0.48 -11.76 3.21 -117.21 -0.38 -12.13 16 19 C 0.10 1.91 10.31 59.85 0.62 2.53 16 20 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 21 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 22 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 23 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.07 1.46 6.43 -51.93 -0.33 1.12 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.17 4.47 5.65 -52.49 -0.30 4.17 16 27 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.25 7.30 -51.93 -0.38 0.87 16 30 H 0.07 1.39 6.12 -51.93 -0.32 1.07 16 LS Contribution 258.69 15.07 3.90 3.90 Total: -1.00 -29.10 258.69 -5.19 -34.29 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.37 Total: 3.80 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.28 Total: -2.62 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.19 Total: -30.56 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.60 Total: -21.32 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.10 -5.19 -34.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261101040.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.045 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds