Wall clock time and date at job start Mon Mar 30 2020 03:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.34935 * 116.99796 * 2 1 4 4 O 1.21616 * 120.00299 * 359.97438 * 3 2 1 5 5 C 1.46644 * 119.99696 * 179.97438 * 3 2 1 6 6 C 1.38880 * 125.82135 * 179.97438 * 5 3 2 7 7 C 1.50703 * 126.08175 * 359.97438 * 6 5 3 8 8 C 1.38314 * 107.83375 * 180.25012 * 6 5 3 9 9 C 1.40200 * 107.53707 * 359.63892 * 8 6 5 10 10 C 1.39637 * 126.06616 * 180.17881 * 9 8 6 11 11 H 1.07997 * 120.00454 * 180.21414 * 10 9 8 12 12 C 1.40524 * 119.99551 * 0.21739 * 10 9 8 13 13 N 1.30543 * 119.99988 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99670 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46661 * 90.00211 * 14 12 10 16 16 H 1.48499 * 109.47002 * 209.99623 * 14 12 10 17 17 H 1.48497 * 109.47163 * 330.00425 * 14 12 10 18 18 N 1.37503 * 125.82067 * 0.02562 * 5 3 2 19 19 C 1.46506 * 125.79940 * 359.95543 * 18 5 3 20 20 H 1.09001 * 109.47074 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47251 * 300.00040 * 1 2 3 22 22 H 1.09001 * 109.46875 * 60.00109 * 1 2 3 23 23 H 1.09002 * 109.47152 * 89.99993 * 7 6 5 24 24 H 1.09001 * 109.46980 * 330.00093 * 7 6 5 25 25 H 1.09004 * 109.47113 * 210.00074 * 7 6 5 26 26 H 1.07991 * 126.23182 * 179.77259 * 8 6 5 27 27 H 0.96994 * 119.99416 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.47160 * 90.00330 * 19 18 5 29 29 H 1.09002 * 109.46830 * 210.00411 * 19 18 5 30 30 H 1.09005 * 109.47028 * 330.00027 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0417 1.2023 0.0000 4 8 1.3793 2.2223 -0.0005 5 6 3.5061 1.2790 0.0006 6 6 4.2589 2.4461 0.0001 7 6 3.7164 3.8521 -0.0016 8 6 5.5949 2.0884 -0.0048 9 6 5.6573 0.6878 0.0010 10 6 6.8215 -0.0832 0.0022 11 1 6.7553 -1.1612 0.0034 12 6 8.0792 0.5435 0.0020 13 7 8.1592 1.8465 0.0011 14 14 9.6367 -0.4879 0.0043 15 1 10.0501 -0.7632 -1.3952 16 1 10.7185 0.2507 0.7038 17 1 9.3795 -1.7712 0.7060 18 7 4.3681 0.2077 0.0006 19 6 3.9795 -1.2049 0.0011 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.5848 4.1920 1.0257 24 1 2.7557 3.8703 -0.5162 25 1 4.4164 4.5110 -0.5155 26 1 6.4368 2.7648 -0.0099 27 1 9.0274 2.2790 0.0013 28 1 3.8829 -1.5555 -1.0265 29 1 4.7413 -1.7911 0.5149 30 1 3.0251 -1.3190 0.5152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261101040.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:48 Heat of formation + Delta-G solvation = -73.747976 kcal Electronic energy + Delta-G solvation = -15303.846736 eV Core-core repulsion = 12677.869439 eV Total energy + Delta-G solvation = -2625.977296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.64269 -40.41084 -37.32146 -35.64734 -34.08301 -31.17209 -29.48061 -28.75300 -26.91558 -25.59680 -23.01193 -21.28127 -19.92576 -18.71091 -18.28221 -17.28324 -17.22414 -16.95426 -15.61952 -15.45421 -14.80811 -14.38904 -14.21403 -13.92067 -13.80136 -13.37352 -13.11752 -13.06686 -12.98474 -12.61803 -12.40592 -12.36665 -12.07810 -11.63835 -11.61514 -11.19014 -11.11681 -9.03307 -8.90773 -8.57017 -6.35436 0.60955 1.44787 1.44920 1.59730 2.06331 2.16068 2.20057 2.61411 2.66604 3.32739 4.28239 4.33799 4.36543 4.38642 4.60456 4.62558 4.68059 4.73326 4.87637 4.94399 5.07360 5.19051 5.26504 5.53514 5.68691 5.83041 6.06437 6.17969 6.68761 6.78457 6.96735 7.20062 7.27932 8.32527 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.041852 B = 0.008340 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.867504 B = 3356.556671 C = 3999.674614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.527 3.473 4 O -0.563 6.563 5 C -0.189 4.189 6 C -0.065 4.065 7 C -0.074 4.074 8 C -0.311 4.311 9 C 0.237 3.763 10 C -0.468 4.468 11 H 0.090 0.910 12 C 0.036 3.964 13 N -0.807 5.807 14 Si 1.004 2.996 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.255 1.255 18 N -0.485 5.485 19 C 0.094 3.906 20 H 0.133 0.867 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.153 0.847 27 H 0.292 0.708 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.461 -5.554 0.114 6.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.284 6.284 3 C 0.382 3.618 4 O -0.459 6.459 5 C -0.290 4.290 6 C -0.073 4.073 7 C -0.131 4.131 8 C -0.333 4.333 9 C 0.122 3.878 10 C -0.503 4.503 11 H 0.108 0.892 12 C -0.182 4.182 13 N -0.433 5.433 14 Si 0.824 3.176 15 H -0.186 1.186 16 H -0.191 1.191 17 H -0.178 1.178 18 N -0.171 5.171 19 C -0.048 4.048 20 H 0.151 0.849 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.170 0.830 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.790 -5.384 0.117 6.585 hybrid contribution 0.280 -0.080 -0.025 0.292 sum -3.510 -5.464 0.093 6.495 Atomic orbital electron populations 1.23056 0.76314 1.05141 1.01761 1.86201 1.24218 1.32582 1.85430 1.19941 0.87086 0.81251 0.73543 1.90687 1.66283 1.36305 1.52669 1.18655 0.85726 0.88333 1.36329 1.20117 0.93698 0.93658 0.99856 1.20220 1.00196 0.91347 1.01344 1.21913 0.94901 0.94729 1.21710 1.18683 0.83019 0.92968 0.93153 1.19085 0.89348 0.94969 1.46864 0.89187 1.26892 1.03922 0.96330 0.91077 1.69652 1.28458 1.11388 1.33824 0.84865 0.74816 0.78426 0.79532 1.18642 1.19128 1.17808 1.43961 1.04723 1.05250 1.63201 1.21827 1.01714 0.78913 1.02311 0.84924 0.92865 0.92918 0.92054 0.91991 0.91625 0.82977 0.89673 0.92168 0.90211 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.45 113.37 1.18 2.03 16 2 O -0.37 -13.84 7.85 -58.51 -0.46 -14.30 16 3 C 0.53 24.28 7.91 70.02 0.55 24.83 16 4 O -0.56 -27.05 14.50 19.45 0.28 -26.76 16 5 C -0.19 -9.61 6.89 40.60 0.28 -9.33 16 6 C -0.07 -3.38 6.16 -19.69 -0.12 -3.50 16 7 C -0.07 -3.27 9.79 71.24 0.70 -2.57 16 8 C -0.31 -17.14 9.67 22.76 0.22 -16.92 16 9 C 0.24 12.69 6.66 39.06 0.26 12.95 16 10 C -0.47 -23.55 8.97 23.17 0.21 -23.34 16 11 H 0.09 4.15 7.10 -2.91 -0.02 4.13 16 12 C 0.04 1.68 5.50 85.44 0.47 2.15 16 13 N -0.81 -39.87 10.21 21.93 0.22 -39.64 16 14 Si 1.00 34.97 29.56 68.60 2.03 37.00 16 15 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 16 H -0.27 -8.90 7.11 99.48 0.71 -8.19 16 17 H -0.25 -8.50 7.11 99.48 0.71 -7.80 16 18 N -0.48 -23.80 3.21 -524.75 -1.69 -25.49 16 19 C 0.09 3.57 10.31 127.77 1.32 4.89 16 20 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 21 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 22 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 23 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.06 2.75 6.43 -2.39 -0.02 2.73 16 25 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 26 H 0.15 8.61 5.65 -2.92 -0.02 8.60 16 27 H 0.29 12.85 8.29 -92.71 -0.77 12.08 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 29 H 0.08 2.82 7.30 -2.39 -0.02 2.80 16 30 H 0.09 3.07 6.12 -2.38 -0.01 3.06 16 Total: -1.00 -62.79 258.69 6.61 -56.18 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 1.15 Total: 21.84 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 5.07 Total: -8.82 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -1.46 Total: -65.13 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.18 Total: -41.06 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Total: -62.79 6.61 -56.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261101040.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.573 kcal (2) G-P(sol) polarization free energy of solvation -62.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds