Wall clock time and date at job start Mon Mar 30 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48497 * 109.46867 * 269.99983 * 3 2 1 5 5 H 1.48497 * 109.46827 * 30.00084 * 3 2 1 6 6 H 1.48498 * 109.46839 * 150.00016 * 3 2 1 7 7 C 1.38813 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99954 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99870 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46851 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47183 * 304.99732 * 11 10 9 13 13 O 1.42894 * 109.47041 * 65.00225 * 11 10 9 14 14 C 1.50706 * 109.46642 * 184.99905 * 11 10 9 15 15 C 1.38163 * 120.02719 * 264.97496 * 14 11 10 16 16 C 1.38243 * 120.05442 * 180.02562 * 15 14 11 17 17 C 1.38289 * 120.11362 * 0.02562 * 16 15 14 18 18 C 1.38125 * 120.05159 * 359.97438 * 17 16 15 19 19 C 1.38708 * 120.02782 * 85.00283 * 14 11 10 20 20 O 1.35898 * 120.05505 * 359.97438 * 19 14 11 21 21 H 0.97007 * 119.99548 * 0.02562 * 1 2 3 22 22 H 0.97003 * 120.00267 * 359.97438 * 9 7 2 23 23 H 1.08997 * 109.46976 * 59.99920 * 10 9 7 24 24 H 1.08996 * 109.47000 * 299.99155 * 10 9 7 25 25 H 0.96703 * 114.00158 * 59.99568 * 13 11 10 26 26 H 1.08001 * 119.97035 * 0.03182 * 15 14 11 27 27 H 1.08004 * 119.94085 * 180.02562 * 16 15 14 28 28 H 1.07993 * 119.96940 * 180.27537 * 17 16 15 29 29 H 1.08000 * 120.02369 * 180.02562 * 18 17 16 30 30 H 0.96705 * 114.00232 * 269.97496 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3799 -4.7127 0.8432 13 8 0.3209 -4.8120 -1.2196 14 6 1.8131 -6.1213 0.1250 15 6 2.1448 -6.8387 -1.0083 16 6 2.8318 -8.0329 -0.8953 17 6 3.1884 -8.5130 0.3516 18 6 2.8591 -7.7996 1.4876 19 6 2.1700 -6.6004 1.3768 20 8 1.8449 -5.8967 2.4930 21 1 -0.4850 0.8401 -0.0004 22 1 0.3555 -2.3881 0.0005 23 1 2.6846 -3.7145 0.8905 24 1 2.6845 -3.7146 -0.8895 25 1 0.8666 -4.9036 -2.0126 26 1 1.8671 -6.4660 -1.9832 27 1 3.0905 -8.5920 -1.7825 28 1 3.7290 -9.4440 0.4369 29 1 3.1382 -8.1747 2.4611 30 1 2.5175 -5.2571 2.7647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107805.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:32 Heat of formation + Delta-G solvation = -83.863586 kcal Electronic energy + Delta-G solvation = -14884.461782 eV Core-core repulsion = 12258.045840 eV Total energy + Delta-G solvation = -2626.415942 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.08874 -38.46097 -37.49119 -36.01668 -33.30890 -32.16822 -30.83215 -28.73003 -25.76264 -23.75167 -23.37184 -22.13703 -19.49160 -19.21389 -18.15835 -17.17367 -16.64649 -16.41999 -16.16389 -15.56330 -15.30033 -15.06875 -14.73110 -14.29469 -13.63107 -13.41176 -13.09399 -12.92219 -12.76592 -12.65700 -12.19345 -12.11722 -11.85783 -11.58772 -11.01544 -10.94122 -9.81197 -9.50678 -9.05019 -7.95876 -5.26989 0.27852 0.37200 1.46721 1.49422 1.57903 2.53908 2.68341 3.31039 3.36172 3.48930 3.52618 3.94965 4.12919 4.18535 4.24545 4.38060 4.53576 4.61394 4.82067 4.92050 5.00025 5.10813 5.42837 5.45585 5.54077 5.56348 5.92839 6.24010 6.74334 6.79537 7.30665 8.04445 8.29012 9.27612 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.046198 B = 0.006164 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.942668 B = 4541.550440 C = 4701.391152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.251 4.251 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.137 3.863 11 C 0.155 3.845 12 H 0.087 0.913 13 O -0.564 6.564 14 C -0.153 4.153 15 C -0.106 4.106 16 C -0.126 4.126 17 C -0.103 4.103 18 C -0.151 4.151 19 C 0.097 3.903 20 O -0.512 6.512 21 H 0.252 0.748 22 H 0.374 0.626 23 H 0.030 0.970 24 H 0.027 0.973 25 H 0.383 0.617 26 H 0.138 0.862 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.145 0.855 30 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.766 -17.547 -0.187 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.382 4.382 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.010 3.990 11 C 0.096 3.904 12 H 0.105 0.895 13 O -0.371 6.371 14 C -0.154 4.154 15 C -0.124 4.124 16 C -0.144 4.144 17 C -0.121 4.121 18 C -0.170 4.170 19 C 0.052 3.948 20 O -0.325 6.325 21 H 0.061 0.939 22 H 0.206 0.794 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.232 0.768 26 H 0.156 0.844 27 H 0.173 0.827 28 H 0.176 0.824 29 H 0.163 0.837 30 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 7.924 -17.706 0.216 19.399 hybrid contribution 0.586 1.450 -0.170 1.573 sum 8.511 -16.256 0.046 18.349 Atomic orbital electron populations 1.69864 1.06868 1.26208 1.59097 1.25661 0.96390 1.01385 1.03349 0.85069 0.77670 0.79032 0.77526 1.21233 1.22143 1.19148 1.19655 0.91523 0.85208 1.41842 0.90407 1.42482 1.05653 1.00841 1.89331 1.21346 0.93775 0.85332 0.98550 1.20618 0.92362 0.90064 0.87374 0.89482 1.86603 1.38195 1.96260 1.16059 1.20858 1.02165 0.97910 0.94501 1.21088 0.97869 0.95600 0.97805 1.21494 0.98166 0.95619 0.99114 1.21449 0.98811 1.00375 0.91447 1.21655 0.99259 0.95063 1.00975 1.18537 0.97885 0.93309 0.85069 1.84742 1.48906 1.56443 1.42395 0.93923 0.79397 0.95212 0.95513 0.76780 0.84441 0.82735 0.82415 0.83738 0.73733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 3 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.74 -39.28 5.55 -343.45 -1.91 -41.19 16 10 C 0.14 5.61 5.88 86.38 0.51 6.12 16 11 C 0.16 5.63 2.96 29.85 0.09 5.72 16 12 H 0.09 3.59 7.69 -2.39 -0.02 3.57 16 13 O -0.56 -20.67 12.93 -148.98 -1.93 -22.60 16 14 C -0.15 -4.50 5.08 -19.77 -0.10 -4.60 16 15 C -0.11 -2.50 9.30 22.25 0.21 -2.29 16 16 C -0.13 -2.31 10.04 22.28 0.22 -2.08 16 17 C -0.10 -1.79 10.04 22.25 0.22 -1.56 16 18 C -0.15 -3.23 9.99 22.36 0.22 -3.01 16 19 C 0.10 2.66 6.68 22.50 0.15 2.81 16 20 O -0.51 -14.57 12.64 -92.40 -1.17 -15.74 16 21 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 22 H 0.37 21.79 7.67 -92.71 -0.71 21.08 16 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.38 10.99 7.33 -74.06 -0.54 10.45 16 26 H 0.14 2.80 6.41 -2.91 -0.02 2.78 16 27 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 28 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 29 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.40 8.77 9.06 -74.05 -0.67 8.10 16 Total: -1.00 -71.99 265.27 -0.60 -72.59 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: -0.74 Total: 35.70 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 2.83 Total: -16.34 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -1.62 Total: -102.22 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -3.10 Total: -38.34 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -71.99 -0.60 -72.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107805.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.272 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds