Wall clock time and date at job start Mon Mar 30 2020 02:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99889 * 2 1 4 4 H 1.48505 * 109.46923 * 270.00030 * 3 2 1 5 5 H 1.48498 * 109.47380 * 29.99986 * 3 2 1 6 6 H 1.48506 * 109.47080 * 150.00348 * 3 2 1 7 7 C 1.38809 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00217 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00205 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47410 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46629 * 59.99907 * 11 10 9 13 13 O 1.42892 * 109.46869 * 300.00319 * 11 10 9 14 14 C 1.50700 * 109.47168 * 179.97438 * 11 10 9 15 15 C 1.38266 * 119.94622 * 265.00338 * 14 11 10 16 16 C 1.38145 * 120.05239 * 180.02562 * 15 14 11 17 17 C 1.38725 * 119.94620 * 359.97438 * 16 15 14 18 18 O 1.35898 * 120.05592 * 179.97438 * 17 16 15 19 19 C 1.38731 * 119.88981 * 359.97438 * 17 16 15 20 20 C 1.38143 * 119.94414 * 0.02562 * 19 17 16 21 21 H 0.97003 * 120.00066 * 359.97438 * 1 2 3 22 22 H 0.97003 * 119.99834 * 0.02562 * 9 7 2 23 23 H 1.09004 * 109.47227 * 59.99751 * 10 9 7 24 24 H 1.09005 * 109.47030 * 300.00380 * 10 9 7 25 25 H 0.96697 * 114.00414 * 299.99142 * 13 11 10 26 26 H 1.08002 * 119.97130 * 0.27980 * 15 14 11 27 27 H 1.08000 * 120.02375 * 180.02562 * 16 15 14 28 28 H 0.96701 * 114.00111 * 89.99845 * 18 17 16 29 29 H 1.08001 * 120.02847 * 179.97438 * 19 17 16 30 30 H 1.08001 * 119.97044 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 0.0001 12 1 0.4368 -4.7621 -0.8897 13 8 0.2427 -4.7437 1.1671 14 6 1.8173 -6.1248 -0.0005 15 6 2.0712 -6.7747 -1.1943 16 6 2.7612 -7.9714 -1.1974 17 6 3.2001 -8.5208 -0.0015 18 8 3.8787 -9.6983 -0.0019 19 6 2.9450 -7.8663 1.1948 20 6 2.2545 -6.6698 1.1926 21 1 -0.4850 0.8401 0.0004 22 1 0.3555 -2.3880 -0.0005 23 1 2.6847 -3.7145 0.8895 24 1 2.6847 -3.7145 -0.8905 25 1 0.7350 -4.7890 1.9981 26 1 1.7332 -6.3442 -2.1254 27 1 2.9597 -8.4784 -2.1301 28 1 4.8375 -9.5996 -0.0799 29 1 3.2852 -8.2923 2.1271 30 1 2.0553 -6.1602 2.1237 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261119495.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:34 Heat of formation + Delta-G solvation = -85.220987 kcal Electronic energy + Delta-G solvation = -14570.192682 eV Core-core repulsion = 11943.717878 eV Total energy + Delta-G solvation = -2626.474804 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.92309 -39.00562 -37.06801 -35.95080 -33.24582 -31.97848 -31.46568 -28.42890 -25.61449 -23.86287 -23.49878 -22.10269 -19.37987 -19.26967 -18.27116 -17.11471 -16.60891 -16.31945 -16.16382 -15.58852 -15.34307 -15.03989 -14.45977 -14.34082 -13.65966 -13.40751 -13.38746 -12.93015 -12.87148 -12.73890 -12.16943 -12.01270 -11.82694 -11.37617 -11.04936 -10.96461 -9.95677 -9.46868 -9.02686 -7.94792 -5.25313 0.20988 0.38693 1.47558 1.49842 1.58368 2.53587 2.63859 3.30361 3.36790 3.54086 3.59362 3.88126 4.03800 4.21261 4.27665 4.37123 4.46035 4.62338 4.88625 4.90946 5.02059 5.13167 5.30744 5.43383 5.46877 5.62969 5.85647 6.25696 6.77296 6.86629 7.32683 8.07380 8.31711 9.28513 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.056316 B = 0.005248 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.074548 B = 5333.854482 C = 5478.355197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.741 5.741 10 C 0.131 3.869 11 C 0.151 3.849 12 H 0.097 0.903 13 O -0.563 6.563 14 C -0.126 4.126 15 C -0.100 4.100 16 C -0.148 4.148 17 C 0.098 3.902 18 O -0.508 6.508 19 C -0.147 4.147 20 C -0.099 4.099 21 H 0.252 0.748 22 H 0.376 0.624 23 H 0.027 0.973 24 H 0.030 0.970 25 H 0.382 0.618 26 H 0.136 0.864 27 H 0.146 0.854 28 H 0.410 0.590 29 H 0.147 0.853 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.461 -17.255 0.407 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.384 5.384 10 C 0.004 3.996 11 C 0.092 3.908 12 H 0.115 0.885 13 O -0.370 6.370 14 C -0.127 4.127 15 C -0.118 4.118 16 C -0.166 4.166 17 C 0.054 3.946 18 O -0.322 6.322 19 C -0.165 4.165 20 C -0.117 4.117 21 H 0.061 0.939 22 H 0.209 0.791 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.231 0.769 26 H 0.154 0.846 27 H 0.164 0.836 28 H 0.270 0.730 29 H 0.164 0.836 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.612 -17.366 0.028 18.961 hybrid contribution 0.785 1.201 0.266 1.459 sum 8.398 -16.165 0.294 18.219 Atomic orbital electron populations 1.69848 1.06766 1.26167 1.59130 1.25619 0.96381 1.01251 1.03402 0.85101 0.77675 0.79198 0.77515 1.21254 1.22114 1.19295 1.19647 0.91492 0.85309 1.41784 0.90595 1.42477 1.05789 1.00812 1.89364 1.21431 0.93983 0.85464 0.98726 1.20827 0.91026 0.89768 0.89199 0.88483 1.86594 1.37580 1.96421 1.16429 1.20510 1.00354 0.97002 0.94873 1.21082 0.98038 0.94813 0.97916 1.21582 1.00496 0.95778 0.98746 1.18598 0.97283 0.86227 0.92515 1.84761 1.25158 1.26242 1.96005 1.21571 1.01035 0.95051 0.98866 1.20983 0.97040 0.95738 0.97964 0.93937 0.79147 0.95492 0.95229 0.76859 0.84565 0.83591 0.73034 0.83554 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -38.67 5.49 -343.43 -1.89 -40.55 16 10 C 0.13 5.24 5.91 86.38 0.51 5.75 16 11 C 0.15 5.08 3.29 29.85 0.10 5.17 16 12 H 0.10 3.41 8.05 -2.39 -0.02 3.39 16 13 O -0.56 -19.77 12.88 -148.98 -1.92 -21.69 16 14 C -0.13 -3.46 5.01 -19.85 -0.10 -3.56 16 15 C -0.10 -2.45 9.67 22.25 0.22 -2.24 16 16 C -0.15 -3.14 9.99 22.36 0.22 -2.92 16 17 C 0.10 2.05 6.70 22.50 0.15 2.21 16 18 O -0.51 -8.76 13.50 -92.40 -1.25 -10.01 16 19 C -0.15 -3.09 9.99 22.37 0.22 -2.86 16 20 C -0.10 -2.36 9.32 22.25 0.21 -2.15 16 21 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 22 H 0.38 21.32 7.54 -92.71 -0.70 20.62 16 23 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.38 10.80 7.39 -74.06 -0.55 10.25 16 26 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 27 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 28 H 0.41 2.97 9.06 -74.06 -0.67 2.30 16 29 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.14 2.84 6.61 -2.91 -0.02 2.82 16 Total: -1.00 -70.54 266.43 -0.65 -71.19 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: -0.74 Total: 30.78 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 2.84 Total: -17.84 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -1.60 Total: -100.79 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -3.17 Total: -31.70 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -70.54 -0.65 -71.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119495.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.036 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds