Wall clock time and date at job start Mon Mar 30 2020 02:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99993 * 2 1 4 4 H 1.48504 * 109.47259 * 269.99919 * 3 2 1 5 5 H 1.48498 * 109.47318 * 29.99862 * 3 2 1 6 6 H 1.48498 * 109.47493 * 149.99942 * 3 2 1 7 7 C 1.38814 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99704 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99477 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47395 * 305.00649 * 11 10 9 13 13 O 1.42897 * 109.46881 * 65.00211 * 11 10 9 14 14 C 1.50699 * 109.47053 * 185.00042 * 11 10 9 15 15 C 1.38260 * 119.94378 * 279.72629 * 14 11 10 16 16 C 1.38149 * 120.05488 * 179.72283 * 15 14 11 17 17 C 1.38736 * 119.94012 * 0.55528 * 16 15 14 18 18 O 1.35900 * 120.05633 * 179.74427 * 17 16 15 19 19 C 1.38733 * 119.89132 * 359.72090 * 17 16 15 20 20 C 1.38145 * 119.94187 * 359.97438 * 19 17 16 21 21 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 22 22 H 0.96992 * 120.00556 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.46891 * 60.00526 * 10 9 7 24 24 H 1.08993 * 109.47378 * 299.99898 * 10 9 7 25 25 H 0.96702 * 114.00429 * 59.99915 * 13 11 10 26 26 H 1.07995 * 119.97570 * 0.02562 * 15 14 11 27 27 H 1.07997 * 120.03166 * 180.27444 * 16 15 14 28 28 H 0.96702 * 114.00034 * 269.97488 * 18 17 16 29 29 H 1.07998 * 120.03197 * 179.97438 * 19 17 16 30 30 H 1.08004 * 119.97395 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 1 0.3800 -4.7134 0.8400 13 8 0.3212 -4.8110 -1.2228 14 6 1.8134 -6.1214 0.1206 15 6 2.4095 -6.6822 -0.9937 16 6 3.1019 -7.8724 -0.8828 17 6 3.1891 -8.5109 0.3459 18 8 3.8653 -9.6845 0.4567 19 6 2.5853 -7.9490 1.4614 20 6 1.8993 -6.7554 1.3464 21 1 -0.4850 0.8400 -0.0004 22 1 0.3557 -2.3881 -0.0005 23 1 2.6854 -3.7149 0.8879 24 1 2.6841 -3.7141 -0.8921 25 1 0.8669 -4.9018 -2.0160 26 1 2.3379 -6.1869 -1.9508 27 1 3.5712 -8.3079 -1.7526 28 1 3.3186 -10.4687 0.3108 29 1 2.6513 -8.4442 2.4189 30 1 1.4294 -6.3173 2.2145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261119496.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:37 Heat of formation + Delta-G solvation = -58.555100 kcal Electronic energy + Delta-G solvation = -14559.943719 eV Core-core repulsion = 11934.625235 eV Total energy + Delta-G solvation = -2625.318484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.94385 -37.86725 -35.96474 -34.07141 -31.45378 -30.99072 -30.12823 -26.85088 -23.87138 -22.87860 -22.00921 -20.88779 -18.53696 -17.23395 -16.98180 -16.01242 -15.53374 -14.93590 -14.50574 -14.28024 -13.96716 -13.45786 -13.18059 -12.95640 -12.47453 -12.22674 -11.92966 -11.77257 -10.97403 -10.80524 -10.76135 -10.51538 -10.16535 -9.79980 -9.54817 -9.03813 -8.88718 -8.48377 -6.92028 -5.74382 -3.04055 1.15999 1.30885 3.44752 3.49427 3.51532 3.55483 4.10139 4.56763 4.78067 4.83275 4.85423 4.91000 5.32027 5.42696 5.55567 5.69426 5.71010 5.82844 5.97712 6.12023 6.33294 6.34493 6.47663 6.57533 6.73531 6.79904 7.51295 7.69980 7.97611 8.43767 9.55282 10.12096 10.48331 11.48044 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.056263 B = 0.005233 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.539664 B = 5349.199917 C = 5480.602446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.130 3.870 11 C 0.137 3.863 12 H 0.108 0.892 13 O -0.547 6.547 14 C -0.108 4.108 15 C -0.095 4.095 16 C -0.142 4.142 17 C 0.093 3.907 18 O -0.501 6.501 19 C -0.143 4.143 20 C -0.093 4.093 21 H 0.255 0.745 22 H 0.388 0.612 23 H 0.028 0.972 24 H 0.021 0.979 25 H 0.369 0.631 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.387 0.613 29 H 0.127 0.873 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 -17.855 -0.156 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.002 3.998 11 C 0.078 3.922 12 H 0.126 0.874 13 O -0.352 6.352 14 C -0.109 4.109 15 C -0.113 4.113 16 C -0.161 4.161 17 C 0.049 3.951 18 O -0.311 6.311 19 C -0.162 4.162 20 C -0.111 4.111 21 H 0.065 0.935 22 H 0.223 0.777 23 H 0.045 0.955 24 H 0.039 0.961 25 H 0.216 0.784 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.242 0.758 29 H 0.145 0.855 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.174 -17.287 0.384 17.788 hybrid contribution 0.385 0.504 -0.424 0.763 sum 4.559 -16.784 -0.039 17.392 Atomic orbital electron populations 1.69680 1.05105 1.25664 1.57402 1.24755 0.95518 0.97682 1.02868 0.86183 0.78635 0.83786 0.77534 1.21683 1.21716 1.20764 1.19224 0.90989 0.84126 1.43107 0.91260 1.42280 1.06097 0.99444 1.89353 1.21282 0.93425 0.86336 0.98728 1.21131 0.93229 0.89532 0.88330 0.87409 1.86636 1.37187 1.96201 1.15213 1.20758 0.98694 0.97599 0.93817 1.20811 0.96645 0.95201 0.98658 1.21347 1.00582 0.97065 0.97099 1.18469 0.95352 0.88519 0.92740 1.84832 1.38220 1.14343 1.93714 1.21384 0.98648 0.97481 0.98676 1.20954 0.98410 0.94393 0.97379 0.93472 0.77714 0.95471 0.96091 0.78356 0.85572 0.85521 0.75798 0.85495 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.91 5.55 -59.90 -0.33 -19.24 16 10 C 0.13 2.66 5.88 -4.04 -0.02 2.64 16 11 C 0.14 2.31 3.24 -27.88 -0.09 2.22 16 12 H 0.11 1.87 8.00 -51.93 -0.42 1.45 16 13 O -0.55 -9.49 13.13 -35.23 -0.46 -9.95 16 14 C -0.11 -1.53 4.97 -104.60 -0.52 -2.05 16 15 C -0.10 -1.20 9.31 -39.61 -0.37 -1.57 16 16 C -0.14 -1.67 9.99 -39.43 -0.39 -2.06 16 17 C 0.09 1.10 6.71 -39.21 -0.26 0.84 16 18 O -0.50 -5.10 13.50 -19.42 -0.26 -5.36 16 19 C -0.14 -1.69 9.99 -39.43 -0.39 -2.08 16 20 C -0.09 -1.20 9.66 -39.60 -0.38 -1.59 16 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.39 10.77 7.67 -40.82 -0.31 10.46 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.37 5.16 7.49 45.56 0.34 5.50 16 26 H 0.13 1.39 6.77 -52.49 -0.36 1.03 16 27 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 28 H 0.39 1.97 9.06 45.56 0.41 2.38 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.13 1.51 8.03 -52.48 -0.42 1.08 16 LS Contribution 266.92 15.07 4.02 4.02 Total: -1.00 -33.70 266.92 -6.00 -39.70 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -1.99 Total: 12.36 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -2.68 Total: -11.21 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.39 Total: -47.19 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.72 Total: -15.31 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.70 -6.00 -39.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119496.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.854 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds