Wall clock time and date at job start Mon Mar 30 2020 03:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48497 * 109.47269 * 240.00675 * 3 2 1 5 5 H 1.48501 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47137 * 120.00430 * 3 2 1 7 7 C 1.37876 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99748 * 185.30789 * 7 2 1 9 9 C 1.50697 * 120.00123 * 5.30833 * 7 2 1 10 10 H 1.09003 * 109.47152 * 185.55192 * 9 7 2 11 11 C 1.50701 * 109.47248 * 65.55239 * 9 7 2 12 12 C 1.34514 * 125.79163 * 99.71329 * 11 9 7 13 13 C 1.41376 * 106.83771 * 179.88990 * 12 11 9 14 14 C 1.34512 * 106.84427 * 0.37381 * 13 12 11 15 15 O 1.34299 * 108.42054 * 359.76933 * 14 13 12 16 16 N 1.46906 * 109.47047 * 305.55189 * 9 7 2 17 17 C 1.47478 * 110.99831 * 271.82280 * 16 9 7 18 18 C 1.53510 * 87.93369 * 221.29834 * 17 16 9 19 19 O 1.42905 * 114.17035 * 139.67074 * 18 17 16 20 20 C 1.47481 * 110.99891 * 175.85498 * 16 9 7 21 21 H 0.96997 * 120.00350 * 359.97438 * 1 2 3 22 22 H 1.07994 * 126.57768 * 0.03086 * 12 11 9 23 23 H 1.08001 * 126.57747 * 180.16800 * 13 12 11 24 24 H 1.08002 * 125.78896 * 179.79283 * 14 13 12 25 25 H 1.09010 * 113.47846 * 336.06719 * 17 16 9 26 26 H 1.09002 * 113.47704 * 106.53004 * 17 16 9 27 27 H 1.08996 * 114.16758 * 272.37884 * 18 17 16 28 28 H 0.96698 * 114.00038 * 86.16567 * 19 18 17 29 29 H 1.08997 * 113.47273 * 253.46726 * 20 16 9 30 30 H 1.08999 * 113.47676 * 23.87264 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0810 -1.1961 0.0860 9 6 1.2559 -2.4963 -0.1219 10 1 1.9514 -3.3274 -0.0050 11 6 0.6018 -2.5753 -1.4772 12 6 1.0733 -3.2517 -2.5400 13 6 0.1495 -3.0567 -3.5923 14 6 -0.8270 -2.2660 -3.1121 15 8 -0.5478 -1.9776 -1.8305 16 7 0.2264 -2.5685 0.9237 17 6 0.7717 -3.1535 2.1628 18 6 -0.5388 -3.9407 2.3020 19 8 -0.3678 -5.2876 2.7479 20 6 -0.5926 -3.7860 0.7757 21 1 -0.4850 0.8400 0.0004 22 1 1.9819 -3.8340 -2.5808 23 1 0.2169 -3.4618 -4.5912 24 1 -1.6895 -1.9218 -3.6636 25 1 1.6433 -3.7869 1.9971 26 1 0.9258 -2.4228 2.9568 27 1 -1.3263 -3.4059 2.8328 28 1 -0.3343 -5.3822 3.7097 29 1 -1.5949 -3.5913 0.3940 30 1 -0.0857 -4.5878 0.2388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137958.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:36 Heat of formation + Delta-G solvation = -4.120569 kcal Electronic energy + Delta-G solvation = -15758.300081 eV Core-core repulsion = 13135.342056 eV Total energy + Delta-G solvation = -2622.958025 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.04882 -40.78875 -36.79707 -34.88910 -33.51672 -31.97098 -28.80259 -26.99702 -26.54692 -23.87248 -22.21086 -21.15053 -20.66496 -18.86011 -18.55239 -17.46545 -16.85934 -16.54355 -16.11292 -15.64724 -15.36965 -14.68760 -14.02128 -13.73204 -13.53885 -13.35884 -13.22830 -13.01107 -12.91148 -12.64309 -12.46696 -11.89090 -11.48044 -11.34557 -10.74590 -10.52447 -10.46443 -9.31806 -8.99536 -7.96136 -6.23006 1.26954 1.43396 1.43922 1.50005 1.98633 2.44813 2.63831 3.11684 3.33835 3.51807 3.69589 4.12154 4.22949 4.41093 4.44407 4.57679 4.63312 4.72347 4.81938 4.94050 5.12871 5.15668 5.22410 5.42163 5.65208 5.84750 5.94193 6.16283 6.37933 6.70350 6.93727 6.99238 7.47420 8.99883 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.013984 C = 0.009462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.653162 B = 2001.848722 C = 2958.455850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.049 3.951 3 Si 0.940 3.060 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.564 4.564 8 H 0.053 0.947 9 C 0.249 3.751 10 H 0.026 0.974 11 C 0.050 3.950 12 C -0.286 4.286 13 C -0.218 4.218 14 C -0.095 4.095 15 O -0.151 6.151 16 N -0.428 5.428 17 C -0.022 4.022 18 C 0.095 3.905 19 O -0.571 6.571 20 C -0.001 4.001 21 H 0.256 0.744 22 H 0.140 0.860 23 H 0.165 0.835 24 H 0.220 0.780 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.397 0.603 29 H 0.068 0.932 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.069 -5.649 1.217 6.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.159 4.159 3 Si 0.766 3.234 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.601 4.601 8 H 0.071 0.929 9 C 0.142 3.858 10 H 0.044 0.956 11 C -0.003 4.003 12 C -0.305 4.305 13 C -0.237 4.237 14 C -0.163 4.163 15 O -0.044 6.044 16 N -0.151 5.151 17 C -0.152 4.152 18 C 0.035 3.965 19 O -0.378 6.378 20 C -0.131 4.131 21 H 0.065 0.935 22 H 0.158 0.842 23 H 0.183 0.817 24 H 0.236 0.764 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.248 0.752 29 H 0.087 0.913 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.734 -4.796 0.761 5.573 hybrid contribution 1.190 0.274 0.017 1.221 sum -1.544 -4.522 0.778 4.841 Atomic orbital electron populations 1.70279 1.06352 1.26248 1.43433 1.25553 0.95478 1.01257 0.93636 0.85921 0.78773 0.80150 0.78543 1.20506 1.20768 1.19519 1.20933 0.92546 0.90812 1.55847 0.92890 1.18416 0.88212 0.95985 0.83202 0.95590 1.23456 0.85328 0.92657 0.98880 1.21639 1.04227 1.10175 0.94495 1.21890 0.96159 1.04651 1.00978 1.24650 1.03471 1.03648 0.84530 1.84348 1.35976 1.57422 1.26636 1.69519 1.15124 1.27576 1.02930 1.24373 0.97412 0.97206 0.96193 1.23285 0.96332 0.82266 0.94614 1.86461 1.95879 1.26264 1.29233 1.23811 1.00036 0.93588 0.95643 0.93490 0.84208 0.81737 0.76362 0.92364 0.90564 0.87620 0.75221 0.91339 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.79 10.83 21.45 0.23 -46.56 16 2 C 0.05 2.70 5.23 84.65 0.44 3.15 16 3 Si 0.94 43.31 29.54 68.60 2.03 45.34 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.56 -31.17 8.81 25.60 0.23 -30.94 16 8 H 0.05 2.91 7.82 -2.91 -0.02 2.88 16 9 C 0.25 12.73 1.86 43.42 0.08 12.81 16 10 H 0.03 1.32 7.41 -2.39 -0.02 1.30 16 11 C 0.05 2.51 4.57 24.83 0.11 2.62 16 12 C -0.29 -12.70 10.80 22.19 0.24 -12.46 16 13 C -0.22 -8.39 10.91 22.19 0.24 -8.15 16 14 C -0.10 -3.82 12.09 66.97 0.81 -3.01 16 15 O -0.15 -7.54 9.31 -2.47 -0.02 -7.56 16 16 N -0.43 -20.33 4.98 -911.83 -4.54 -24.86 16 17 C -0.02 -0.88 7.49 83.57 0.63 -0.25 16 18 C 0.09 3.20 5.56 30.94 0.17 3.37 16 19 O -0.57 -16.61 13.71 -148.98 -2.04 -18.65 16 20 C 0.00 -0.06 6.60 83.57 0.55 0.49 16 21 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 22 H 0.14 5.69 8.06 -2.91 -0.02 5.67 16 23 H 0.17 4.99 8.06 -2.91 -0.02 4.96 16 24 H 0.22 6.64 8.06 -2.91 -0.02 6.62 16 25 H 0.06 2.30 7.49 -2.38 -0.02 2.28 16 26 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.40 7.09 9.12 -74.06 -0.68 6.41 16 29 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.05 2.10 7.81 -2.39 -0.02 2.08 16 Total: -1.00 -65.42 260.16 -0.37 -65.79 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.47 Total: 18.89 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 3.50 Total: -32.37 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -4.30 Total: -71.42 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -2.07 Total: -26.22 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -65.42 -0.37 -65.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137958.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.666 kcal (2) G-P(sol) polarization free energy of solvation -65.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds