Wall clock time and date at job start Mon Mar 30 2020 03:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99645 * 2 1 4 4 H 1.48504 * 109.47101 * 240.00028 * 3 2 1 5 5 H 1.48498 * 109.47606 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46889 * 120.00283 * 3 2 1 7 7 C 1.38812 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99485 * 157.27232 * 7 2 1 9 9 N 1.36930 * 120.00425 * 337.27897 * 7 2 1 10 10 C 1.46500 * 119.99869 * 325.63160 * 9 7 2 11 11 C 1.50703 * 109.47218 * 270.00608 * 10 9 7 12 12 C 1.34518 * 125.79095 * 89.71568 * 11 10 9 13 13 C 1.41382 * 106.83756 * 179.89096 * 12 11 10 14 14 C 1.34513 * 106.84408 * 0.36727 * 13 12 11 15 15 O 1.34306 * 125.78584 * 270.02024 * 11 10 9 16 16 C 1.46498 * 120.00416 * 145.63581 * 9 7 2 17 17 C 1.54037 * 113.81679 * 327.78260 * 16 9 7 18 18 O 1.44447 * 85.42632 * 91.80409 * 17 16 9 19 19 C 1.44182 * 93.37598 * 24.09004 * 18 17 16 20 20 H 0.96994 * 119.99934 * 355.63546 * 1 2 3 21 21 H 1.09003 * 109.47005 * 30.00071 * 10 9 7 22 22 H 1.08995 * 109.47529 * 150.00011 * 10 9 7 23 23 H 1.07994 * 126.57941 * 0.02562 * 12 11 10 24 24 H 1.07999 * 126.57750 * 180.16596 * 13 12 11 25 25 H 1.07993 * 125.78954 * 179.74883 * 14 13 12 26 26 H 1.08994 * 113.00165 * 195.95502 * 16 9 7 27 27 H 1.08994 * 113.86284 * 205.91595 * 17 16 9 28 28 H 1.08998 * 113.85788 * 337.61805 * 17 16 9 29 29 H 1.08999 * 113.86209 * 221.75982 * 19 18 17 30 30 H 1.09004 * 113.98053 * 90.07430 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0274 -1.2386 -0.3608 9 7 1.4053 -2.3418 0.4591 10 6 0.4496 -2.2689 1.5669 11 6 1.1818 -2.4334 2.8738 12 6 1.7143 -1.4397 3.6077 13 6 2.2986 -2.0397 4.7468 14 6 2.0954 -3.3649 4.6368 15 8 1.4185 -3.5975 3.5003 16 6 1.7139 -3.6341 -0.1581 17 6 2.0377 -3.5440 -1.6614 18 8 3.4128 -3.4116 -1.2393 19 6 3.1793 -4.0742 0.0198 20 1 -0.4850 0.8376 0.0639 21 1 -0.0520 -1.3012 1.5509 22 1 -0.2896 -3.0630 1.4621 23 1 1.6967 -0.3857 3.3731 24 1 2.8126 -1.5319 5.5495 25 1 2.4216 -4.1146 5.3423 26 1 0.9885 -4.4088 0.0902 27 1 1.8320 -4.4616 -2.2125 28 1 1.6363 -2.6542 -2.1463 29 1 3.6815 -3.6041 0.8653 30 1 3.3227 -5.1543 -0.0147 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261166648.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:08 Heat of formation + Delta-G solvation = 13.498059 kcal Electronic energy + Delta-G solvation = -15734.888823 eV Core-core repulsion = 13112.694798 eV Total energy + Delta-G solvation = -2622.194024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.21920 -41.03181 -36.87951 -33.70145 -33.31586 -31.25376 -29.06569 -27.36882 -27.06732 -24.61653 -22.44781 -21.28458 -20.91927 -18.84116 -17.81666 -17.32740 -16.84331 -16.77715 -16.38745 -16.25748 -15.32590 -15.03865 -14.66140 -13.86782 -13.59987 -13.46589 -13.30203 -13.20145 -12.74133 -12.43418 -12.35247 -12.04987 -11.89504 -11.20999 -10.70558 -10.58712 -10.43494 -9.18894 -8.79457 -7.93655 -5.52172 1.01563 1.43082 1.45521 1.52313 1.86827 2.34121 2.48839 2.96151 3.17342 3.52956 3.84204 4.17616 4.30949 4.34803 4.43819 4.47028 4.55570 4.69687 4.95282 5.07624 5.08912 5.22933 5.29536 5.37532 5.48079 5.51238 5.72279 5.78898 6.34576 6.50466 7.04891 7.70153 8.20328 9.04417 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.014678 C = 0.009950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.727181 B = 1907.135522 C = 2813.355436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.025 4.025 3 Si 0.944 3.056 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.056 0.944 9 N -0.562 5.562 10 C 0.213 3.787 11 C -0.017 4.017 12 C -0.235 4.235 13 C -0.227 4.227 14 C -0.054 4.054 15 O -0.192 6.192 16 C 0.106 3.894 17 C 0.031 3.969 18 O -0.405 6.405 19 C 0.015 3.985 20 H 0.256 0.744 21 H 0.108 0.892 22 H 0.056 0.944 23 H 0.120 0.880 24 H 0.164 0.836 25 H 0.241 0.759 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -7.697 5.863 9.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.222 4.222 3 Si 0.772 3.228 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.073 0.927 9 N -0.279 5.279 10 C 0.086 3.914 11 C -0.069 4.069 12 C -0.255 4.255 13 C -0.246 4.246 14 C -0.121 4.121 15 O -0.088 6.088 16 C -0.003 4.003 17 C -0.047 4.047 18 O -0.325 6.325 19 C -0.064 4.064 20 H 0.065 0.935 21 H 0.125 0.875 22 H 0.074 0.926 23 H 0.138 0.862 24 H 0.181 0.819 25 H 0.257 0.743 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.827 -7.701 5.534 9.657 hybrid contribution 0.489 1.405 0.189 1.500 sum 2.316 -6.296 5.722 8.817 Atomic orbital electron populations 1.70065 1.06190 1.26809 1.52199 1.25564 0.95559 1.00799 1.00322 0.85713 0.78310 0.80596 0.78158 1.20625 1.21175 1.20980 1.19085 0.94759 0.86655 1.37582 0.92658 1.43763 1.49478 1.02257 1.32434 1.19652 0.89385 1.03623 0.78731 1.24284 1.03159 0.82511 0.96972 1.21603 1.06289 0.99779 0.97852 1.22055 1.06850 0.94950 1.00737 1.24698 1.00027 0.98177 0.89228 1.84012 1.59221 1.34029 1.31528 1.23304 0.95459 0.88770 0.92773 1.24412 0.80966 1.01574 0.97748 1.89588 1.29810 1.78351 1.34729 1.24645 0.97825 0.97454 0.86497 0.93465 0.87521 0.92610 0.86209 0.81886 0.74319 0.89942 0.87637 0.91235 0.92217 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.42 11.32 21.65 0.25 -50.17 16 2 C -0.03 -1.35 4.95 84.86 0.42 -0.93 16 3 Si 0.94 44.72 29.61 68.60 2.03 46.75 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 7 C -0.25 -13.56 7.94 84.03 0.67 -12.90 16 8 H 0.06 3.19 6.88 -2.91 -0.02 3.17 16 9 N -0.56 -27.15 2.67 -717.17 -1.92 -29.07 16 10 C 0.21 9.82 5.86 85.63 0.50 10.32 16 11 C -0.02 -0.71 6.90 24.83 0.17 -0.54 16 12 C -0.23 -9.87 10.81 22.19 0.24 -9.63 16 13 C -0.23 -7.55 10.91 22.19 0.24 -7.31 16 14 C -0.05 -1.62 12.09 66.97 0.81 -0.81 16 15 O -0.19 -7.15 10.65 -2.56 -0.03 -7.18 16 16 C 0.11 4.27 4.74 45.69 0.22 4.49 16 17 C 0.03 1.20 8.42 72.30 0.61 1.81 16 18 O -0.41 -17.61 11.13 -148.98 -1.66 -19.27 16 19 C 0.02 0.57 8.82 72.29 0.64 1.21 16 20 H 0.26 13.77 8.32 -92.71 -0.77 13.00 16 21 H 0.11 5.54 5.33 -2.39 -0.01 5.53 16 22 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 23 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 24 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 25 H 0.24 4.37 8.06 -2.91 -0.02 4.35 16 26 H 0.08 2.92 7.97 -2.39 -0.02 2.90 16 27 H 0.11 3.17 8.14 -2.39 -0.02 3.16 16 28 H 0.07 3.11 7.61 -2.39 -0.02 3.09 16 29 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 Total: -1.00 -62.62 260.83 4.32 -58.30 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.13 Total: 14.92 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.52 Total: -14.29 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.67 Total: -79.24 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -1.69 Total: -26.45 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.62 4.32 -58.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166648.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.794 kcal (2) G-P(sol) polarization free energy of solvation -62.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds