Wall clock time and date at job start Mon Mar 30 2020 03:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39801 * 126.51478 * 2 1 4 4 C 1.35489 * 107.83982 * 179.86783 * 3 2 1 5 5 C 1.50694 * 125.50776 * 180.15002 * 4 3 2 6 6 C 1.52997 * 109.47271 * 275.32048 * 5 4 3 7 7 C 1.50703 * 109.47228 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99722 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00306 * 179.97438 * 7 6 5 10 10 N 1.31508 * 119.99680 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00013 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47050 * 90.00054 * 11 9 7 13 13 H 1.48499 * 109.46785 * 210.00052 * 11 9 7 14 14 H 1.48499 * 109.47437 * 330.00052 * 11 9 7 15 15 N 1.34962 * 108.98480 * 0.40606 * 4 3 2 16 16 H 0.96998 * 125.63556 * 179.74976 * 15 4 3 17 17 C 1.37695 * 108.73084 * 359.74262 * 15 4 3 18 18 C 1.46488 * 126.26201 * 179.97438 * 17 15 4 19 19 O 1.21633 * 119.99872 * 180.02562 * 18 17 15 20 20 O 1.34889 * 120.00539 * 0.04792 * 18 17 15 21 21 H 1.09002 * 109.47152 * 269.68338 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.68438 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.68419 * 1 2 3 24 24 H 1.07988 * 126.07835 * 0.02562 * 3 2 1 25 25 H 1.09007 * 109.46995 * 35.32108 * 5 4 3 26 26 H 1.08996 * 109.47533 * 155.31578 * 5 4 3 27 27 H 1.09000 * 109.47399 * 299.99660 * 6 5 4 28 28 H 1.08996 * 109.47330 * 59.99889 * 6 5 4 29 29 H 0.97001 * 120.00234 * 180.02562 * 10 9 7 30 30 H 0.96698 * 117.00444 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1236 0.0000 4 6 3.6224 0.6898 0.0030 5 6 4.8444 1.5716 0.0072 6 6 5.1836 1.9801 -1.4276 7 6 6.4052 2.8626 -1.4233 8 1 6.8909 3.1078 -0.4903 9 6 6.9029 3.3568 -2.6104 10 7 6.3113 3.0585 -3.7463 11 14 8.4168 4.4512 -2.6048 12 1 9.6350 3.6115 -2.7311 13 1 8.3474 5.3977 -3.7469 14 1 8.4713 5.2143 -1.3321 15 7 3.6298 -0.6598 -0.0042 16 1 4.4212 -1.2207 -0.0074 17 6 2.3282 -1.1091 -0.0061 18 6 1.8945 -2.5083 -0.0139 19 8 0.7083 -2.7773 -0.0153 20 8 2.8105 -3.4984 -0.0191 21 1 -0.3633 -0.0057 1.0277 22 1 -0.3633 -0.8872 -0.5187 23 1 -0.3633 0.8928 -0.5089 24 1 2.0158 2.1540 0.0004 25 1 4.6467 2.4636 0.6019 26 1 5.6843 1.0267 0.4380 27 1 5.3813 1.0883 -2.0223 28 1 4.3437 2.5252 -1.8584 29 1 6.6616 3.4059 -4.5815 30 1 2.4763 -4.4057 -0.0238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261202635.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:59 Heat of formation + Delta-G solvation = -95.313470 kcal Electronic energy + Delta-G solvation = -14543.170740 eV Core-core repulsion = 11916.258293 eV Total energy + Delta-G solvation = -2626.912446 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.50053 -40.61707 -37.13533 -35.92054 -33.91460 -33.21096 -30.38085 -28.14737 -27.20468 -24.19773 -22.90107 -21.20675 -20.22611 -19.51273 -18.60877 -18.23683 -16.85045 -16.50868 -16.11660 -15.27082 -14.99239 -14.56932 -14.42377 -14.09507 -13.94406 -13.68625 -13.39005 -13.08854 -12.84040 -12.67246 -12.61588 -12.37817 -11.86599 -11.62639 -11.56526 -11.23384 -10.54871 -9.74449 -9.09177 -8.18385 -6.30356 0.18529 1.43609 1.44512 1.55479 1.66222 1.92510 2.08970 2.33752 2.43747 3.15642 3.95598 4.04447 4.25000 4.40087 4.55688 4.77132 4.79671 4.89404 4.97264 5.06758 5.18095 5.36042 5.50585 5.52260 5.62214 5.83472 5.88351 6.00247 6.20972 6.47991 6.87362 6.96244 7.39674 8.93066 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.047275 B = 0.005424 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.131116 B = 5161.377294 C = 5397.008806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.068 4.068 3 C -0.229 4.229 4 C 0.091 3.909 5 C -0.043 4.043 6 C 0.035 3.965 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.000 4.000 10 N -0.935 5.935 11 Si 0.965 3.035 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.260 1.260 15 N -0.519 5.519 16 H 0.429 0.571 17 C -0.087 4.087 18 C 0.563 3.437 19 O -0.534 6.534 20 O -0.513 6.513 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.153 0.847 25 H 0.091 0.909 26 H 0.075 0.925 27 H -0.012 1.012 28 H -0.004 1.004 29 H 0.263 0.737 30 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -8.668 8.798 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C -0.253 4.253 4 C -0.030 4.030 5 C -0.081 4.081 6 C -0.003 4.003 7 C -0.579 4.579 8 H 0.087 0.913 9 C -0.198 4.198 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.184 1.184 15 N -0.115 5.115 16 H 0.268 0.732 17 C -0.196 4.196 18 C 0.410 3.590 19 O -0.426 6.426 20 O -0.328 6.328 21 H 0.098 0.902 22 H 0.087 0.913 23 H 0.097 0.903 24 H 0.170 0.830 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.006 0.994 28 H 0.014 0.986 29 H 0.071 0.929 30 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -6.484 -8.500 8.629 13.739 hybrid contribution 0.923 -0.339 -0.546 1.125 sum -5.561 -8.839 8.083 13.206 Atomic orbital electron populations 1.20382 0.87860 1.03123 1.02946 1.20298 0.96804 0.90419 1.00187 1.20808 0.91020 0.99496 1.13938 1.20979 0.97834 0.83022 1.01156 1.20322 0.91586 0.97136 0.99073 1.18932 0.95290 0.94766 0.91297 1.21691 1.12462 1.30341 0.93427 0.91320 1.25973 1.00550 0.98028 0.95241 1.70110 1.42218 1.46637 0.98511 0.85443 0.79031 0.78474 0.78077 1.19930 1.21181 1.18367 1.41743 1.07465 1.06490 1.55776 0.73202 1.19167 0.84713 0.90671 1.25091 1.19300 0.83252 0.84522 0.71943 1.90887 1.18451 1.84121 1.49115 1.84556 1.41667 1.20889 1.85723 0.90209 0.91337 0.90319 0.82960 0.89069 0.90643 0.99358 0.98571 0.92853 0.70250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.27 9.83 71.24 0.70 -1.57 16 2 C -0.07 -2.17 6.22 -19.54 -0.12 -2.29 16 3 C -0.23 -7.69 10.66 22.01 0.23 -7.46 16 4 C 0.09 3.15 6.36 41.44 0.26 3.42 16 5 C -0.04 -1.62 5.68 29.85 0.17 -1.45 16 6 C 0.03 1.74 4.96 29.85 0.15 1.89 16 7 C -0.54 -29.24 9.11 25.60 0.23 -29.01 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 10 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 11 Si 0.97 42.86 29.54 68.60 2.03 44.89 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 14 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 15 N -0.52 -16.08 6.07 -172.33 -1.05 -17.12 16 16 H 0.43 11.38 8.96 -92.71 -0.83 10.55 16 17 C -0.09 -2.74 7.10 40.32 0.29 -2.45 16 18 C 0.56 15.74 8.30 69.97 0.58 16.32 16 19 O -0.53 -16.64 15.60 19.40 0.30 -16.34 16 20 O -0.51 -10.45 13.44 -58.03 -0.78 -11.23 16 21 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.07 1.91 6.50 -2.39 -0.02 1.89 16 23 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 24 H 0.15 4.72 8.06 -2.92 -0.02 4.70 16 25 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 26 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 27 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.44 4.29 9.11 -74.06 -0.67 3.62 16 Total: -1.00 -67.47 270.47 3.41 -64.06 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -0.33 Total: 13.66 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 2.96 Total: -22.15 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -0.76 Total: -72.88 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.48 Total: -27.57 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -67.47 3.41 -64.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261202635.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.258 kcal (2) G-P(sol) polarization free energy of solvation -67.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds