Wall clock time and date at job start Mon Mar 30 2020 03:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39802 * 126.07753 * 2 1 4 4 C 1.37994 * 106.97052 * 180.26352 * 3 2 1 5 5 C 1.46493 * 126.26802 * 179.74950 * 4 3 2 6 6 O 1.21621 * 119.99400 * 0.02606 * 5 4 3 7 7 O 1.34888 * 120.00283 * 180.02562 * 5 4 3 8 8 N 1.37704 * 107.47212 * 359.77182 * 4 3 2 9 9 H 0.97000 * 125.63956 * 180.02562 * 8 4 3 10 10 C 1.34955 * 108.72908 * 359.97438 * 8 4 3 11 11 C 1.50701 * 125.50906 * 179.97438 * 10 8 4 12 12 C 1.52997 * 109.47212 * 265.02532 * 11 10 8 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 H 1.08998 * 109.46927 * 270.12983 * 1 2 3 22 22 H 1.08997 * 109.46731 * 30.13588 * 1 2 3 23 23 H 1.09004 * 109.46747 * 150.12995 * 1 2 3 24 24 H 1.07999 * 126.51837 * 0.02562 * 3 2 1 25 25 H 0.96700 * 117.00415 * 180.02562 * 7 5 4 26 26 H 1.09002 * 109.47060 * 25.02587 * 11 10 8 27 27 H 1.09001 * 109.47380 * 145.02674 * 11 10 8 28 28 H 1.09002 * 109.47153 * 299.99998 * 12 11 10 29 29 H 1.08998 * 109.47533 * 59.99628 * 12 11 10 30 30 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3303 1.1299 0.0000 4 6 3.6342 0.6782 -0.0061 5 6 4.8396 1.5106 -0.0135 6 8 4.7414 2.7228 -0.0142 7 8 6.0584 0.9326 -0.0194 8 7 3.5949 -0.6983 -0.0044 9 1 4.3668 -1.2857 -0.0073 10 6 2.3050 -1.0950 0.0030 11 6 1.8290 -2.5248 0.0066 12 6 1.5411 -2.9701 -1.4286 13 6 1.0657 -4.4001 -1.4252 14 1 0.9772 -4.9375 -0.4925 15 6 0.7426 -5.0221 -2.6125 16 7 0.8499 -4.3675 -3.7481 17 14 0.1540 -6.7949 -2.6083 18 1 0.1215 -7.3023 -1.2131 19 1 -1.2097 -6.8650 -3.1919 20 1 1.0816 -7.6264 -3.4164 21 1 -0.3633 0.0023 1.0277 22 1 -0.3633 0.8888 -0.5159 23 1 -0.3633 -0.8912 -0.5118 24 1 2.0072 2.1605 0.0004 25 1 6.8243 1.5229 -0.0238 26 1 2.6001 -3.1634 0.4374 27 1 0.9185 -2.6032 0.6008 28 1 0.7700 -2.3315 -1.8594 29 1 2.4515 -2.8917 -2.0229 30 1 0.6223 -4.8049 -4.5834 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234856.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:07 Heat of formation + Delta-G solvation = -95.808288 kcal Electronic energy + Delta-G solvation = -14593.284098 eV Core-core repulsion = 11966.350194 eV Total energy + Delta-G solvation = -2626.933903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.50739 -40.68489 -37.12396 -35.91722 -33.90129 -33.28701 -30.35326 -27.99973 -27.14294 -24.43882 -22.72996 -21.45692 -20.20481 -19.23005 -18.68224 -18.28360 -16.84703 -16.50607 -16.24632 -15.33530 -15.08085 -14.64250 -14.42740 -14.11050 -13.79309 -13.47476 -13.27168 -13.14435 -12.84003 -12.67119 -12.53703 -12.28575 -11.95800 -11.76002 -11.63419 -11.18784 -10.54416 -9.81521 -9.00620 -8.17700 -6.29338 0.17693 1.43136 1.44253 1.56300 1.61664 1.89852 2.10692 2.31323 2.43970 3.16412 4.00507 4.13936 4.23086 4.35211 4.53628 4.75193 4.79966 5.00985 5.06268 5.10445 5.18225 5.30915 5.49699 5.52817 5.61890 5.83878 5.91708 6.00759 6.22137 6.46880 6.88509 6.93140 7.40616 8.93792 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.041875 B = 0.005802 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.493486 B = 4824.699159 C = 5162.978605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.197 4.197 3 C -0.095 4.095 4 C -0.078 4.078 5 C 0.567 3.433 6 O -0.542 6.542 7 O -0.511 6.511 8 N -0.516 5.516 9 H 0.429 0.571 10 C 0.083 3.917 11 C -0.042 4.042 12 C 0.036 3.964 13 C -0.538 4.538 14 H 0.068 0.932 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.258 1.258 19 H -0.281 1.281 20 H -0.282 1.282 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.159 0.841 25 H 0.436 0.564 26 H 0.073 0.927 27 H 0.089 0.911 28 H -0.001 1.001 29 H -0.014 1.014 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 7.496 8.829 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.202 4.202 3 C -0.122 4.122 4 C -0.188 4.188 5 C 0.414 3.586 6 O -0.434 6.434 7 O -0.326 6.326 8 N -0.112 5.112 9 H 0.269 0.731 10 C -0.038 4.038 11 C -0.080 4.080 12 C -0.001 4.001 13 C -0.576 4.576 14 H 0.086 0.914 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.788 3.212 18 H -0.182 1.182 19 H -0.207 1.207 20 H -0.208 1.208 21 H 0.096 0.904 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.177 0.823 25 H 0.299 0.701 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.017 0.983 29 H 0.005 0.995 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.418 7.489 8.663 12.669 hybrid contribution 0.690 -0.642 -0.573 1.103 sum 6.109 6.847 8.091 12.234 Atomic orbital electron populations 1.20173 0.88508 1.02365 1.02400 1.19577 0.97181 0.91240 1.12225 1.21410 0.89456 0.99572 1.01761 1.19281 0.92966 0.82639 1.23881 1.19303 0.82591 0.85154 0.71601 1.90914 1.87656 1.15472 1.49338 1.84555 1.16605 1.45865 1.85577 1.41756 1.08036 1.05972 1.55407 0.73148 1.20850 0.83255 0.97300 1.02368 1.20295 1.01417 0.87151 0.99157 1.18909 0.94978 0.95047 0.91172 1.21701 1.44089 0.98499 0.93356 0.91421 1.25951 0.95794 1.02702 0.95266 1.70120 1.49922 1.38900 0.98505 0.85416 0.77744 0.79286 0.78706 1.18194 1.20655 1.20803 0.90432 0.90923 0.92906 0.82293 0.70143 0.90847 0.89236 0.98296 0.99524 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.26 10.02 71.24 0.71 -1.54 16 2 C -0.20 -6.53 6.11 -20.12 -0.12 -6.65 16 3 C -0.10 -2.99 10.60 22.59 0.24 -2.75 16 4 C -0.08 -2.40 7.10 40.32 0.29 -2.12 16 5 C 0.57 15.75 8.30 69.97 0.58 16.33 16 6 O -0.54 -17.43 17.67 19.44 0.34 -17.09 16 7 O -0.51 -10.21 13.44 -58.03 -0.78 -10.99 16 8 N -0.52 -15.81 6.07 -172.32 -1.05 -16.85 16 9 H 0.43 11.23 8.96 -92.71 -0.83 10.40 16 10 C 0.08 2.87 6.36 41.44 0.26 3.13 16 11 C -0.04 -1.59 5.20 29.85 0.16 -1.43 16 12 C 0.04 1.82 4.95 29.85 0.15 1.96 16 13 C -0.54 -28.92 9.11 25.60 0.23 -28.69 16 14 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 15 C 0.00 0.04 5.46 84.65 0.46 0.50 16 16 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 17 Si 0.96 42.75 29.54 68.60 2.03 44.77 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 21 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.05 1.75 7.38 -2.38 -0.02 1.74 16 24 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 25 H 0.44 4.16 9.11 -74.06 -0.67 3.48 16 26 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.09 3.19 7.99 -2.39 -0.02 3.17 16 28 H 0.00 -0.07 7.67 -2.39 -0.02 -0.09 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -67.55 272.34 3.45 -64.10 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -0.33 Total: 12.76 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 2.96 Total: -21.25 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -0.76 Total: -72.30 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.44 Total: -28.07 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -67.55 3.45 -64.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234856.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.710 kcal (2) G-P(sol) polarization free energy of solvation -67.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds