Wall clock time and date at job start Mon Mar 30 2020 03:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39801 * 126.51430 * 2 1 4 4 C 1.35488 * 107.84264 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.50660 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47187 * 334.99260 * 5 4 3 7 7 C 1.52991 * 109.47382 * 95.00192 * 5 4 3 8 8 C 1.50702 * 109.46880 * 214.99853 * 5 4 3 9 9 H 1.08005 * 120.00139 * 359.97438 * 8 5 4 10 10 C 1.37874 * 120.00244 * 179.97438 * 8 5 4 11 11 N 1.31521 * 119.99663 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 120.00439 * 180.02562 * 10 8 5 13 13 H 1.48500 * 109.47186 * 59.99851 * 12 10 8 14 14 H 1.48496 * 109.47235 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46701 * 299.99881 * 12 10 8 16 16 N 1.34963 * 108.98286 * 359.97438 * 4 3 2 17 17 H 0.96997 * 125.63289 * 179.97438 * 16 4 3 18 18 C 1.37698 * 108.72997 * 359.73368 * 16 4 3 19 19 C 1.46490 * 126.26327 * 180.26933 * 18 16 4 20 20 O 1.21618 * 120.00217 * 180.18886 * 19 18 16 21 21 O 1.34890 * 120.00242 * 0.18772 * 19 18 16 22 22 H 1.09002 * 109.47152 * 90.02668 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02769 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02750 * 1 2 3 25 25 H 1.07993 * 126.07692 * 359.97438 * 3 2 1 26 26 H 1.09004 * 109.47510 * 59.99622 * 7 5 4 27 27 H 1.09002 * 109.47761 * 179.97438 * 7 5 4 28 28 H 1.09000 * 109.47081 * 299.99823 * 7 5 4 29 29 H 0.97000 * 120.00079 * 179.97438 * 11 10 8 30 30 H 0.96699 * 117.00172 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1236 0.0000 4 6 3.6225 0.6898 0.0006 5 6 4.8444 1.5718 0.0013 6 1 4.5941 2.5396 -0.4331 7 6 5.3308 1.7681 1.4385 8 6 5.9332 0.9222 -0.8132 9 1 5.7581 -0.0340 -1.2839 10 6 7.1531 1.5483 -0.9575 11 7 7.3662 2.7129 -0.3846 12 14 8.5026 0.7434 -1.9676 13 1 8.0300 0.5528 -3.3625 14 1 9.7067 1.6125 -1.9668 15 1 8.8440 -0.5752 -1.3761 16 7 3.6298 -0.6598 0.0015 17 1 4.4212 -1.2206 0.0017 18 6 2.3282 -1.1090 0.0076 19 6 1.8945 -2.5082 0.0161 20 8 0.7084 -2.7773 0.0174 21 8 2.8106 -3.4983 0.0224 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 0.8902 0.5134 24 1 -0.3633 -0.8898 0.5143 25 1 2.0158 2.1541 -0.0004 26 1 5.5811 0.8002 1.8729 27 1 6.2149 2.4057 1.4391 28 1 4.5432 2.2380 2.0277 29 1 8.2245 3.1533 -0.4858 30 1 2.4763 -4.4057 0.0275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261237302.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:03 Heat of formation + Delta-G solvation = -87.942368 kcal Electronic energy + Delta-G solvation = -15028.995115 eV Core-core repulsion = 12402.402304 eV Total energy + Delta-G solvation = -2626.592811 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.39672 -40.57518 -37.10908 -36.23657 -33.54348 -32.81730 -29.98971 -27.98070 -27.16790 -24.80560 -22.81221 -21.01241 -20.19213 -19.42946 -18.34958 -18.14844 -16.77802 -16.76291 -15.68171 -15.22728 -14.83774 -14.56787 -14.28103 -13.86152 -13.73790 -13.51477 -13.27192 -12.96334 -12.79635 -12.74689 -12.58207 -12.27182 -12.20477 -11.60041 -11.54810 -11.02924 -10.52569 -9.63858 -8.95776 -8.14629 -6.30027 0.29422 1.42661 1.44078 1.50758 1.83081 2.03724 2.16103 2.40801 2.48027 3.15340 4.14778 4.19576 4.39807 4.52863 4.79446 4.86420 4.93244 5.03091 5.12145 5.17161 5.21451 5.37540 5.53024 5.56002 5.71203 5.89670 6.03681 6.13623 6.30772 6.61665 6.77040 7.01237 7.39548 8.89901 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.033694 B = 0.007913 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.815289 B = 3537.772406 C = 4090.441563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.065 4.065 3 C -0.246 4.246 4 C 0.119 3.881 5 C 0.092 3.908 6 H 0.032 0.968 7 C -0.121 4.121 8 C -0.539 4.539 9 H 0.055 0.945 10 C 0.023 3.977 11 N -0.909 5.909 12 Si 0.953 3.047 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.270 1.270 16 N -0.514 5.514 17 H 0.424 0.576 18 C -0.100 4.100 19 C 0.563 3.437 20 O -0.536 6.536 21 O -0.515 6.515 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.152 0.848 26 H 0.026 0.974 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.265 0.735 30 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 -7.219 1.309 10.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 C -0.269 4.269 4 C -0.004 4.004 5 C 0.073 3.927 6 H 0.050 0.950 7 C -0.180 4.180 8 C -0.577 4.577 9 H 0.073 0.927 10 C -0.177 4.177 11 N -0.548 5.548 12 Si 0.778 3.222 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.195 1.195 16 N -0.108 5.108 17 H 0.263 0.737 18 C -0.209 4.209 19 C 0.411 3.589 20 O -0.428 6.428 21 O -0.330 6.330 22 H 0.092 0.908 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.169 0.831 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -7.491 -6.939 1.331 10.298 hybrid contribution 1.181 -0.981 -0.540 1.628 sum -6.310 -7.920 0.791 10.157 Atomic orbital electron populations 1.20359 0.87717 1.03222 1.02676 1.20257 0.96673 0.90251 1.00256 1.20784 0.90886 0.99327 1.15860 1.21261 0.97582 0.83213 0.98320 1.17512 0.87678 0.92835 0.94703 0.95044 1.21614 1.00956 0.99841 0.95547 1.21288 0.98156 1.06130 1.32150 0.92659 1.25624 1.00426 0.95303 0.96380 1.69970 1.24701 1.15959 1.44120 0.85695 0.78619 0.78597 0.79257 1.20094 1.20933 1.19486 1.41770 1.07096 1.06849 1.55121 0.73744 1.19202 0.84786 0.90687 1.26240 1.19315 0.83205 0.84499 0.71889 1.90858 1.18292 1.84151 1.49480 1.84588 1.41809 1.20816 1.85801 0.90817 0.89954 0.91203 0.83060 0.95469 0.91478 0.94821 0.92615 0.70466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.32 9.84 71.24 0.70 -1.62 16 2 C -0.07 -2.29 6.22 -19.54 -0.12 -2.41 16 3 C -0.25 -9.22 10.66 22.01 0.23 -8.98 16 4 C 0.12 4.92 5.81 41.44 0.24 5.17 16 5 C 0.09 4.35 2.67 -12.29 -0.03 4.31 16 6 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 7 C -0.12 -5.53 8.95 71.98 0.64 -4.88 16 8 C -0.54 -27.46 8.30 25.60 0.21 -27.25 16 9 H 0.06 2.74 7.03 -2.91 -0.02 2.72 16 10 C 0.02 1.19 5.30 84.65 0.45 1.64 16 11 N -0.91 -49.25 11.32 21.45 0.24 -49.01 16 12 Si 0.95 41.20 29.54 68.60 2.03 43.22 16 13 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 16 N -0.51 -19.56 5.70 -172.33 -0.98 -20.55 16 17 H 0.42 15.47 8.27 -92.71 -0.77 14.70 16 18 C -0.10 -3.60 7.10 40.32 0.29 -3.31 16 19 C 0.56 17.80 8.30 69.97 0.58 18.39 16 20 O -0.54 -18.09 15.60 19.45 0.30 -17.79 16 21 O -0.52 -12.63 13.44 -58.04 -0.78 -13.41 16 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.07 2.03 6.48 -2.38 -0.02 2.01 16 25 H 0.15 5.12 8.06 -2.91 -0.02 5.10 16 26 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.07 3.37 6.07 -2.39 -0.01 3.35 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 30 H 0.43 5.77 9.11 -74.06 -0.67 5.10 16 Total: -1.00 -59.48 264.10 3.74 -55.74 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.26 Total: 20.74 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 3.19 Total: -18.95 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -0.74 Total: -69.56 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.48 Total: -31.19 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -59.48 3.74 -55.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261237302.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.203 kcal (2) G-P(sol) polarization free energy of solvation -59.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds