Wall clock time and date at job start Mon Mar 30 2020 02:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00164 * 2 1 4 4 H 1.48502 * 109.47606 * 240.00256 * 3 2 1 5 5 H 1.48510 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47198 * 120.00082 * 3 2 1 7 7 C 1.37882 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99793 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47204 * 305.00367 * 10 9 7 12 12 N 1.46905 * 109.47034 * 65.00189 * 10 9 7 13 13 C 1.50698 * 109.47049 * 184.99831 * 10 9 7 14 14 C 1.38196 * 119.97746 * 265.00005 * 13 10 9 15 15 C 1.38154 * 120.11066 * 179.97438 * 14 13 10 16 16 C 1.38793 * 120.05750 * 0.02562 * 15 14 13 17 17 O 1.35892 * 120.03138 * 179.97438 * 16 15 14 18 18 C 1.38621 * 119.94123 * 0.02562 * 16 15 14 19 19 C 1.38650 * 119.88976 * 359.74574 * 18 16 15 20 20 O 1.35898 * 120.02443 * 180.27434 * 19 18 16 21 21 H 0.96995 * 119.99589 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46976 * 60.00236 * 9 7 2 23 23 H 1.09003 * 109.47133 * 300.00443 * 9 7 2 24 24 H 1.00901 * 110.99869 * 60.00199 * 12 10 9 25 25 H 1.00896 * 110.99543 * 183.95322 * 12 10 9 26 26 H 1.07998 * 119.94382 * 359.95997 * 14 13 10 27 27 H 1.08005 * 119.97316 * 179.97438 * 15 14 13 28 28 H 0.96696 * 114.00200 * 89.99600 * 17 16 15 29 29 H 1.08002 * 120.04700 * 180.02562 * 18 16 15 30 30 H 0.96697 * 113.99813 * 270.23596 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9295 -3.5552 -0.8423 12 7 3.0084 -3.6539 1.2548 13 6 1.4959 -4.9636 -0.1243 14 6 1.1638 -5.6798 1.0100 15 6 0.4763 -6.8731 0.8997 16 6 0.1179 -7.3559 -0.3512 17 8 -0.5578 -8.5299 -0.4591 18 6 0.4508 -6.6399 -1.4906 19 6 1.1366 -5.4402 -1.3770 20 8 1.4595 -4.7333 -2.4918 21 1 -0.4849 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.3961 -3.7518 2.0508 25 1 3.7160 -4.3731 1.2523 26 1 1.4423 -5.3061 1.9842 27 1 0.2183 -7.4312 1.7877 28 1 -1.5197 -8.4334 -0.4391 29 1 0.1724 -7.0138 -2.4648 30 1 2.3190 -4.9651 -2.8693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244458.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:31 Heat of formation + Delta-G solvation = -64.952948 kcal Electronic energy + Delta-G solvation = -14960.552420 eV Core-core repulsion = 12334.956504 eV Total energy + Delta-G solvation = -2625.595915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.02993 -37.80616 -36.19972 -34.54803 -32.35386 -29.93539 -28.91426 -28.07427 -24.32802 -22.48041 -22.08704 -19.79036 -18.85087 -17.14853 -16.44716 -16.10194 -15.48389 -15.01935 -14.78663 -14.38393 -14.20879 -13.70391 -13.05767 -12.64271 -12.18773 -11.82380 -11.72232 -11.09138 -10.79317 -10.61337 -10.54563 -10.41419 -10.20151 -9.59386 -9.05444 -8.67956 -8.25635 -8.08261 -7.98374 -5.86893 -3.85626 1.34206 1.39473 3.42660 3.45910 3.49463 3.65578 4.09653 4.57621 4.63502 5.00731 5.15845 5.25837 5.33301 5.50399 5.65181 5.90914 5.97531 6.21454 6.40817 6.47917 6.61204 6.78033 6.92775 7.60989 7.63046 7.73160 7.92282 8.00798 8.11625 8.16429 8.56603 9.19793 9.75630 11.24976 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.045105 B = 0.006679 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.620725 B = 4191.144770 C = 4316.351603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.050 3.950 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.493 4.493 8 H 0.061 0.939 9 C 0.041 3.959 10 C 0.138 3.862 11 H 0.080 0.920 12 N -0.823 5.823 13 C -0.128 4.128 14 C -0.098 4.098 15 C -0.150 4.150 16 C 0.099 3.901 17 O -0.501 6.501 18 C -0.172 4.172 19 C 0.127 3.873 20 O -0.484 6.484 21 H 0.258 0.742 22 H 0.025 0.975 23 H 0.013 0.987 24 H 0.334 0.666 25 H 0.321 0.679 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.387 0.613 29 H 0.129 0.871 30 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.305 -14.240 -0.403 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.149 4.149 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.004 3.996 10 C 0.026 3.974 11 H 0.098 0.902 12 N -0.350 5.350 13 C -0.131 4.131 14 C -0.116 4.116 15 C -0.168 4.168 16 C 0.055 3.945 17 O -0.311 6.311 18 C -0.191 4.191 19 C 0.082 3.918 20 O -0.293 6.293 21 H 0.068 0.932 22 H 0.044 0.956 23 H 0.031 0.969 24 H 0.148 0.852 25 H 0.133 0.867 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.243 0.757 29 H 0.147 0.853 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.403 -13.324 -0.546 13.409 hybrid contribution -0.161 -0.134 0.043 0.214 sum 1.243 -13.458 -0.503 13.524 Atomic orbital electron populations 1.69970 1.06022 1.26404 1.51938 1.25023 0.94804 0.99147 0.95969 0.86639 0.79438 0.83240 0.78487 1.20445 1.21632 1.20362 1.21111 0.93257 0.90095 1.48716 0.92089 1.19095 0.92772 0.90377 0.97361 1.20696 0.94793 0.89906 0.91969 0.90169 1.58846 1.17853 1.54194 1.04145 1.21845 0.99547 0.99237 0.92422 1.20771 0.98364 0.94087 0.98419 1.21334 1.01866 0.96764 0.96856 1.18143 0.98144 0.86317 0.91888 1.84795 1.22934 1.27481 1.95912 1.21633 1.03704 0.94649 0.99117 1.18089 0.97723 0.89713 0.86311 1.84936 1.40913 1.62725 1.40720 0.93231 0.95645 0.96889 0.85184 0.86747 0.85459 0.85641 0.75725 0.85264 0.75896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.49 -14.11 8.84 -34.44 -0.30 -14.41 16 8 H 0.06 1.73 7.74 -52.48 -0.41 1.32 16 9 C 0.04 1.07 4.60 -27.89 -0.13 0.94 16 10 C 0.14 2.79 2.65 -68.86 -0.18 2.60 16 11 H 0.08 1.64 7.69 -51.93 -0.40 1.24 16 12 N -0.82 -14.89 8.54 -5.65 -0.05 -14.94 16 13 C -0.13 -2.24 5.06 -104.45 -0.53 -2.77 16 14 C -0.10 -1.51 9.26 -39.63 -0.37 -1.87 16 15 C -0.15 -2.09 9.98 -39.41 -0.39 -2.48 16 16 C 0.10 1.40 6.70 -39.23 -0.26 1.14 16 17 O -0.50 -6.02 13.50 -19.40 -0.26 -6.28 16 18 C -0.17 -2.57 9.93 -39.29 -0.39 -2.96 16 19 C 0.13 2.14 6.67 -39.24 -0.26 1.87 16 20 O -0.48 -7.97 12.64 -19.42 -0.25 -8.22 16 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.33 5.75 7.21 -39.29 -0.28 5.47 16 25 H 0.32 4.81 9.06 -39.29 -0.36 4.45 16 26 H 0.13 1.77 6.28 -52.49 -0.33 1.44 16 27 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.39 2.85 9.06 45.56 0.41 3.26 16 29 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.39 4.31 9.06 45.56 0.41 4.72 16 LS Contribution 264.80 15.07 3.99 3.99 Total: -1.00 -34.19 264.80 -5.54 -39.73 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -1.77 Total: 12.02 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -2.92 Total: -16.56 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.69 Total: -42.00 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.51 Total: -14.50 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.19 -5.54 -39.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244458.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.219 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds