Wall clock time and date at job start Mon Mar 30 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46976 * 54.99550 * 10 9 7 12 12 N 1.46900 * 109.46648 * 294.99361 * 10 9 7 13 13 C 1.50696 * 109.46626 * 174.99629 * 10 9 7 14 14 C 1.38205 * 119.97388 * 99.72632 * 13 10 9 15 15 C 1.38155 * 120.11044 * 179.71854 * 14 13 10 16 16 C 1.38793 * 120.05219 * 0.55456 * 15 14 13 17 17 O 1.35894 * 120.02436 * 179.70556 * 16 15 14 18 18 C 1.38615 * 119.94563 * 359.71612 * 16 15 14 19 19 C 1.38653 * 119.89157 * 0.02562 * 18 16 15 20 20 O 1.35897 * 120.02445 * 179.97438 * 19 18 16 21 21 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 23 23 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 24 24 H 1.00901 * 111.00161 * 300.00008 * 12 10 9 25 25 H 1.00894 * 110.99977 * 63.96337 * 12 10 9 26 26 H 1.07998 * 119.94241 * 359.97438 * 14 13 10 27 27 H 1.07994 * 119.96977 * 180.24939 * 15 14 13 28 28 H 0.96711 * 113.99879 * 270.01526 * 17 16 15 29 29 H 1.08006 * 120.04974 * 180.02562 * 18 16 15 30 30 H 0.96692 * 113.99966 * 270.01886 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9326 -3.5570 0.8273 12 7 3.0036 -3.6511 -1.2703 13 6 1.4964 -4.9639 0.1117 14 6 1.2456 -5.7259 -1.0137 15 6 0.5643 -6.9227 -0.9027 16 6 0.1199 -7.3569 0.3384 17 8 -0.5554 -8.5313 0.4461 18 6 0.3653 -6.5917 1.4679 19 6 1.0540 -5.3936 1.3545 20 8 1.2956 -4.6410 2.4600 21 1 -0.4850 -0.8400 0.0004 22 1 0.6281 -2.5591 0.8866 23 1 0.6207 -2.5548 -0.8933 24 1 2.3883 -3.7472 -2.0642 25 1 3.5650 -2.8163 -1.3468 26 1 1.5863 -5.3873 -1.9810 27 1 0.3730 -7.5183 -1.7830 28 1 -1.5141 -8.4437 0.3534 29 1 0.0207 -6.9282 2.4345 30 1 0.6021 -3.9964 2.6562 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244462.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:33 Heat of formation + Delta-G solvation = -75.047519 kcal Electronic energy + Delta-G solvation = -15023.378444 eV Core-core repulsion = 12397.344795 eV Total energy + Delta-G solvation = -2626.033649 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.97867 -37.78817 -36.15964 -34.81726 -32.63119 -29.88910 -29.00903 -27.65111 -24.23149 -22.48935 -22.18579 -20.07954 -18.84494 -17.10392 -16.86440 -16.19284 -15.85423 -15.10647 -14.47203 -13.85577 -13.82394 -13.54183 -13.24008 -12.71103 -12.62480 -12.26776 -11.61352 -11.30441 -10.89861 -10.74655 -10.57218 -10.31887 -10.24335 -10.16671 -8.73751 -8.61061 -8.48368 -8.28757 -7.76308 -6.48805 -4.20126 1.39475 1.47195 3.37692 3.39910 3.55675 3.66010 4.23634 4.44438 4.64528 5.06399 5.14402 5.23814 5.29120 5.53670 5.79253 5.93065 6.05096 6.27788 6.42285 6.50480 6.55164 6.81888 6.87346 7.06631 7.27284 7.65658 7.87705 7.95787 7.97631 8.17457 8.31778 8.73772 9.52738 10.91203 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.046213 B = 0.006763 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.746728 B = 4138.949535 C = 4311.972470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 1.071 2.929 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.604 4.604 8 H 0.052 0.948 9 C -0.009 4.009 10 C 0.136 3.864 11 H 0.086 0.914 12 N -0.839 5.839 13 C -0.087 4.087 14 C -0.080 4.080 15 C -0.155 4.155 16 C 0.099 3.901 17 O -0.500 6.500 18 C -0.173 4.173 19 C 0.123 3.877 20 O -0.493 6.493 21 H 0.268 0.732 22 H 0.006 0.994 23 H 0.007 0.993 24 H 0.327 0.673 25 H 0.349 0.651 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.386 0.614 29 H 0.129 0.871 30 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 -10.666 -0.399 10.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.187 4.187 3 Si 0.899 3.101 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.642 4.642 8 H 0.070 0.930 9 C -0.047 4.047 10 C 0.024 3.976 11 H 0.104 0.896 12 N -0.368 5.368 13 C -0.088 4.088 14 C -0.098 4.098 15 C -0.174 4.174 16 C 0.055 3.945 17 O -0.310 6.310 18 C -0.192 4.192 19 C 0.078 3.922 20 O -0.304 6.304 21 H 0.078 0.922 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.139 0.861 25 H 0.163 0.837 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.241 0.759 29 H 0.147 0.853 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.069 -10.239 0.000 10.239 hybrid contribution -1.369 -0.366 -0.188 1.429 sum -1.438 -10.605 -0.189 10.704 Atomic orbital electron populations 1.70776 1.06935 1.30564 1.46263 1.25856 0.96484 1.02797 0.93523 0.83502 0.74670 0.75018 0.76867 1.21384 1.21375 1.21037 1.21993 0.94263 0.91665 1.56266 0.93013 1.19869 0.94994 0.93673 0.96153 1.20258 0.94535 0.89549 0.93214 0.89568 1.59270 1.27812 1.46123 1.03639 1.20622 0.98473 0.97659 0.92050 1.20783 0.96904 0.93283 0.98876 1.21369 1.01940 0.97180 0.96868 1.18145 0.98095 0.86189 0.92073 1.84819 1.23224 1.27941 1.95010 1.21565 1.02774 0.95732 0.99147 1.18063 0.97031 0.91228 0.85890 1.84742 1.49520 1.53071 1.43067 0.92174 0.97532 0.97527 0.86097 0.83683 0.84918 0.85646 0.75918 0.85270 0.74992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.85 13.65 55.43 0.76 -26.10 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 3 Si 1.07 24.54 29.90 -169.99 -5.08 19.45 16 4 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.60 -16.16 8.55 -34.44 -0.29 -16.46 16 8 H 0.05 1.37 7.14 -52.49 -0.37 0.99 16 9 C -0.01 -0.21 3.91 -27.88 -0.11 -0.31 16 10 C 0.14 2.80 2.64 -68.87 -0.18 2.62 16 11 H 0.09 1.94 7.85 -51.93 -0.41 1.53 16 12 N -0.84 -15.79 8.68 -5.66 -0.05 -15.84 16 13 C -0.09 -1.61 5.10 -104.45 -0.53 -2.14 16 14 C -0.08 -1.31 9.24 -39.62 -0.37 -1.68 16 15 C -0.15 -2.27 9.98 -39.41 -0.39 -2.66 16 16 C 0.10 1.45 6.70 -39.24 -0.26 1.19 16 17 O -0.50 -6.21 13.50 -19.41 -0.26 -6.48 16 18 C -0.17 -2.69 9.93 -39.29 -0.39 -3.08 16 19 C 0.12 2.17 6.67 -39.24 -0.26 1.91 16 20 O -0.49 -8.57 12.65 -19.42 -0.25 -8.81 16 21 H 0.27 7.88 7.22 -40.82 -0.29 7.58 16 22 H 0.01 0.16 7.48 -51.93 -0.39 -0.23 16 23 H 0.01 0.17 8.00 -51.93 -0.42 -0.25 16 24 H 0.33 5.74 7.28 -39.29 -0.29 5.45 16 25 H 0.35 6.77 7.90 -39.29 -0.31 6.46 16 26 H 0.13 2.01 6.24 -52.49 -0.33 1.68 16 27 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.39 2.83 9.06 45.56 0.41 3.25 16 29 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 30 H 0.39 5.67 8.62 45.56 0.39 6.06 16 LS Contribution 260.81 15.07 3.93 3.93 Total: -1.00 -31.55 260.81 -5.48 -37.04 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -1.64 Total: 17.03 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.89 Total: -20.22 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.71 Total: -41.94 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.51 Total: -15.29 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.45 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.55 -5.48 -37.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244462.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.011 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds