Wall clock time and date at job start Mon Mar 30 2020 03:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34872 * 116.99533 * 2 1 4 4 O 1.21600 * 120.00000 * 359.97438 * 3 2 1 5 5 C 1.46715 * 120.00021 * 179.97438 * 3 2 1 6 6 N 1.37977 * 125.70738 * 0.26489 * 5 3 2 7 7 H 0.96994 * 125.32860 * 0.03045 * 6 5 3 8 8 C 1.34354 * 109.34858 * 180.14894 * 6 5 3 9 9 C 1.50703 * 125.91029 * 179.88751 * 8 6 5 10 10 C 1.39535 * 108.18451 * 359.62907 * 8 6 5 11 11 C 1.41516 * 126.57886 * 180.21061 * 10 8 6 12 12 H 1.07998 * 119.99572 * 309.15006 * 11 10 8 13 13 C 1.39686 * 119.99694 * 129.15674 * 11 10 8 14 14 N 1.31045 * 119.99391 * 171.37585 * 13 11 10 15 15 Si 1.86793 * 120.00482 * 351.37719 * 13 11 10 16 16 H 1.48503 * 109.47341 * 95.73553 * 15 13 11 17 17 H 1.48499 * 109.47450 * 215.73822 * 15 13 11 18 18 H 1.48498 * 109.47111 * 335.73599 * 15 13 11 19 19 C 1.36285 * 125.71010 * 179.97438 * 5 3 2 20 20 C 1.50698 * 126.47899 * 0.02768 * 19 5 3 21 21 H 1.09005 * 109.46936 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47706 * 300.00298 * 1 2 3 23 23 H 1.09002 * 109.46928 * 60.00446 * 1 2 3 24 24 H 1.08998 * 109.47249 * 264.61314 * 9 8 6 25 25 H 1.09004 * 109.47081 * 144.61064 * 9 8 6 26 26 H 1.08999 * 109.46745 * 24.61682 * 9 8 6 27 27 H 0.97001 * 119.99127 * 180.02562 * 14 13 11 28 28 H 1.09007 * 109.46959 * 276.15843 * 20 19 5 29 29 H 1.08995 * 109.47385 * 36.15824 * 20 19 5 30 30 H 1.09005 * 109.46942 * 156.16314 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2018 0.0000 4 8 1.4019 2.2215 -0.0005 5 6 3.5294 1.2787 0.0006 6 7 4.3923 0.2021 -0.0040 7 1 4.1256 -0.7305 -0.0086 8 6 5.6598 0.6475 0.0014 9 6 6.8984 -0.2110 0.0013 10 6 5.6312 2.0426 0.0012 11 6 6.7500 2.9091 0.0018 12 1 7.5380 2.7729 0.7277 13 6 6.8350 3.9405 -0.9364 14 7 7.7790 4.8436 -0.8333 15 14 5.6033 4.0325 -2.3376 16 1 4.5021 4.9581 -1.9689 17 1 6.2812 4.5322 -3.5607 18 1 5.0472 2.6803 -2.5975 19 6 4.2658 2.4255 0.0001 20 6 3.7302 3.8341 -0.0004 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 7.2491 -0.3430 1.0249 25 1 7.6760 0.2731 -0.5896 26 1 6.6660 -1.1840 -0.4315 27 1 7.8377 5.5601 -1.4846 28 1 3.4981 4.1341 -1.0223 29 1 2.8256 3.8791 0.6058 30 1 4.4798 4.5079 0.4147 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261257848.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:01 Heat of formation + Delta-G solvation = -49.290728 kcal Electronic energy + Delta-G solvation = -15413.740890 eV Core-core repulsion = 12788.824140 eV Total energy + Delta-G solvation = -2624.916751 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.52370 -39.22766 -36.00822 -33.37654 -31.80049 -30.75708 -27.96420 -27.53014 -25.64784 -24.55775 -21.22161 -19.05185 -18.63930 -17.81716 -16.42377 -16.24192 -16.01333 -14.67017 -14.47305 -13.83718 -13.33428 -12.98154 -12.81120 -12.63703 -12.18212 -11.98663 -11.89598 -11.60377 -11.40954 -11.15921 -10.66400 -10.57530 -10.34015 -9.95622 -9.91501 -9.54884 -8.72310 -7.50274 -6.97266 -6.34324 -4.12254 1.94148 3.06701 3.24115 3.38736 3.52432 3.62248 4.00721 4.02312 4.35932 5.18025 5.24817 5.25959 5.37203 5.65332 5.83817 5.91974 6.25608 6.30714 6.37557 6.58066 6.64639 6.70416 6.96374 7.01210 7.26301 7.54118 7.85778 7.98380 8.31019 8.42687 8.69702 8.94632 9.30999 10.72242 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.031497 B = 0.010906 C = 0.008880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.758619 B = 2566.742607 C = 3152.271879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.373 6.373 3 C 0.532 3.468 4 O -0.513 6.513 5 C -0.073 4.073 6 N -0.534 5.534 7 H 0.404 0.596 8 C -0.019 4.019 9 C -0.063 4.063 10 C 0.009 3.991 11 C -0.462 4.462 12 H 0.083 0.917 13 C 0.092 3.908 14 N -0.863 5.863 15 Si 0.878 3.122 16 H -0.256 1.256 17 H -0.297 1.297 18 H -0.257 1.257 19 C -0.099 4.099 20 C -0.096 4.096 21 H 0.095 0.905 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.272 0.728 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 -9.369 0.137 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.291 6.291 3 C 0.380 3.620 4 O -0.403 6.403 5 C -0.182 4.182 6 N -0.131 5.131 7 H 0.240 0.760 8 C -0.135 4.135 9 C -0.121 4.121 10 C 0.003 3.997 11 C -0.497 4.497 12 H 0.101 0.899 13 C -0.118 4.118 14 N -0.495 5.495 15 Si 0.706 3.294 16 H -0.182 1.182 17 H -0.224 1.224 18 H -0.181 1.181 19 C -0.111 4.111 20 C -0.153 4.153 21 H 0.113 0.887 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.841 -9.021 0.065 12.631 hybrid contribution -0.943 -0.341 -0.720 1.235 sum -9.784 -9.361 -0.655 13.557 Atomic orbital electron populations 1.23123 0.77023 1.02910 1.02342 1.86574 1.22922 1.33984 1.85575 1.20265 0.87575 0.81069 0.73065 1.90808 1.65636 1.35632 1.48213 1.18326 0.84817 0.88568 1.26445 1.41160 1.05523 1.07029 1.59358 0.76016 1.21393 0.84022 0.95265 1.12818 1.20062 0.93981 0.96255 1.01770 1.17379 0.91659 0.89752 1.00880 1.18282 1.04473 1.10648 1.16255 0.89885 1.25566 0.94872 0.93586 0.97735 1.69720 1.32507 1.12163 1.35101 0.87044 0.81088 0.80554 0.80729 1.18218 1.22429 1.18131 1.20114 0.93810 0.92662 1.04501 1.20618 1.00505 0.92632 1.01553 0.88691 0.92162 0.92203 0.92226 0.89856 0.93565 0.91781 0.92183 0.91834 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.57 101.05 1.07 1.55 16 2 O -0.37 -6.09 10.58 -40.96 -0.43 -6.53 16 3 C 0.53 10.66 7.94 34.15 0.27 10.93 16 4 O -0.51 -11.11 14.60 -19.34 -0.28 -11.39 16 5 C -0.07 -1.59 7.01 -82.38 -0.58 -2.17 16 6 N -0.53 -10.29 6.01 -5.28 -0.03 -10.32 16 7 H 0.40 6.24 8.96 -40.82 -0.37 5.87 16 8 C -0.02 -0.40 7.26 -81.00 -0.59 -0.99 16 9 C -0.06 -1.08 10.20 36.01 0.37 -0.71 16 10 C 0.01 0.23 4.59 -106.80 -0.49 -0.26 16 11 C -0.46 -12.72 9.28 -37.79 -0.35 -13.07 16 12 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 13 C 0.09 2.56 5.10 -17.35 -0.09 2.47 16 14 N -0.86 -24.79 13.94 55.54 0.77 -24.02 16 15 Si 0.88 21.84 23.70 -169.99 -4.03 17.81 16 16 H -0.26 -6.11 5.40 56.52 0.30 -5.81 16 17 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.26 -6.58 6.86 56.52 0.39 -6.19 16 19 C -0.10 -2.41 4.84 -103.96 -0.50 -2.91 16 20 C -0.10 -2.26 7.42 36.00 0.27 -2.00 16 21 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.27 7.28 8.30 -40.82 -0.34 6.94 16 28 H 0.06 1.42 4.84 -51.93 -0.25 1.17 16 29 H 0.06 1.41 6.74 -51.93 -0.35 1.06 16 30 H 0.07 1.74 7.33 -51.93 -0.38 1.36 16 LS Contribution 255.39 15.07 3.85 3.85 Total: -1.00 -31.13 255.39 -4.33 -35.46 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.55 Total: 2.29 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.63 Total: -7.15 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.74 Total: -34.34 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.72 Total: -17.92 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.03 Total: 17.81 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.13 -4.33 -35.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257848.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.833 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds