Wall clock time and date at job start Mon Mar 30 2020 03:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34872 * 116.99533 * 2 1 4 4 O 1.21600 * 120.00000 * 359.97438 * 3 2 1 5 5 C 1.46715 * 120.00021 * 179.97438 * 3 2 1 6 6 N 1.37977 * 125.70738 * 0.26489 * 5 3 2 7 7 H 0.96994 * 125.32860 * 0.03045 * 6 5 3 8 8 C 1.34354 * 109.34858 * 180.14894 * 6 5 3 9 9 C 1.50703 * 125.91029 * 179.88751 * 8 6 5 10 10 C 1.39535 * 108.18451 * 359.62907 * 8 6 5 11 11 C 1.41516 * 126.57886 * 180.21061 * 10 8 6 12 12 H 1.07998 * 119.99572 * 309.15006 * 11 10 8 13 13 C 1.39686 * 119.99694 * 129.15674 * 11 10 8 14 14 N 1.31045 * 119.99391 * 171.37585 * 13 11 10 15 15 Si 1.86793 * 120.00482 * 351.37719 * 13 11 10 16 16 H 1.48503 * 109.47341 * 95.73553 * 15 13 11 17 17 H 1.48499 * 109.47450 * 215.73822 * 15 13 11 18 18 H 1.48498 * 109.47111 * 335.73599 * 15 13 11 19 19 C 1.36285 * 125.71010 * 179.97438 * 5 3 2 20 20 C 1.50698 * 126.47899 * 0.02768 * 19 5 3 21 21 H 1.09005 * 109.46936 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47706 * 300.00298 * 1 2 3 23 23 H 1.09002 * 109.46928 * 60.00446 * 1 2 3 24 24 H 1.08998 * 109.47249 * 264.61314 * 9 8 6 25 25 H 1.09004 * 109.47081 * 144.61064 * 9 8 6 26 26 H 1.08999 * 109.46745 * 24.61682 * 9 8 6 27 27 H 0.97001 * 119.99127 * 180.02562 * 14 13 11 28 28 H 1.09007 * 109.46959 * 276.15843 * 20 19 5 29 29 H 1.08995 * 109.47385 * 36.15824 * 20 19 5 30 30 H 1.09005 * 109.46942 * 156.16314 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2018 0.0000 4 8 1.4019 2.2215 -0.0005 5 6 3.5294 1.2787 0.0006 6 7 4.3923 0.2021 -0.0040 7 1 4.1256 -0.7305 -0.0086 8 6 5.6598 0.6475 0.0014 9 6 6.8984 -0.2110 0.0013 10 6 5.6312 2.0426 0.0012 11 6 6.7500 2.9091 0.0018 12 1 7.5380 2.7729 0.7277 13 6 6.8350 3.9405 -0.9364 14 7 7.7790 4.8436 -0.8333 15 14 5.6033 4.0325 -2.3376 16 1 4.5021 4.9581 -1.9689 17 1 6.2812 4.5322 -3.5607 18 1 5.0472 2.6803 -2.5975 19 6 4.2658 2.4255 0.0001 20 6 3.7302 3.8341 -0.0004 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 7.2491 -0.3430 1.0249 25 1 7.6760 0.2731 -0.5896 26 1 6.6660 -1.1840 -0.4315 27 1 7.8377 5.5601 -1.4846 28 1 3.4981 4.1341 -1.0223 29 1 2.8256 3.8791 0.6058 30 1 4.4798 4.5079 0.4147 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261257848.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:01 Heat of formation + Delta-G solvation = -70.705228 kcal Electronic energy + Delta-G solvation = -15414.669493 eV Core-core repulsion = 12788.824140 eV Total energy + Delta-G solvation = -2625.845353 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.17998 -40.74557 -37.45417 -35.35125 -33.59255 -32.48716 -29.31660 -29.13175 -27.31965 -26.28333 -22.76955 -20.90435 -20.32218 -19.44952 -18.19670 -17.80994 -17.40165 -16.52129 -16.07344 -15.47360 -15.11415 -14.58067 -14.29396 -14.17805 -13.97655 -13.55478 -13.24428 -13.22901 -12.99107 -12.94263 -12.38081 -12.22817 -11.87599 -11.81768 -11.78500 -11.38486 -10.76230 -9.29382 -8.76915 -8.41993 -6.21616 0.31304 1.29473 1.37109 1.52302 1.70364 1.86993 2.20532 2.33637 2.45985 3.18682 4.03995 4.26759 4.31892 4.33523 4.45166 4.52748 4.68841 4.73661 4.77714 4.94560 5.02645 5.21335 5.25770 5.34376 5.43021 5.67297 5.91826 6.19391 6.55897 6.76518 6.87442 6.96766 7.23542 8.68038 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.031497 B = 0.010906 C = 0.008880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.758619 B = 2566.742607 C = 3152.271879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.538 3.462 4 O -0.533 6.533 5 C -0.079 4.079 6 N -0.509 5.509 7 H 0.428 0.572 8 C 0.007 3.993 9 C -0.064 4.064 10 C -0.041 4.041 11 C -0.466 4.466 12 H 0.050 0.950 13 C 0.052 3.948 14 N -0.908 5.908 15 Si 0.926 3.074 16 H -0.245 1.245 17 H -0.293 1.293 18 H -0.265 1.265 19 C -0.127 4.127 20 C -0.089 4.089 21 H 0.138 0.862 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.275 0.725 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 -12.036 -0.208 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.282 6.282 3 C 0.387 3.613 4 O -0.425 6.425 5 C -0.189 4.189 6 N -0.106 5.106 7 H 0.268 0.732 8 C -0.112 4.112 9 C -0.121 4.121 10 C -0.047 4.047 11 C -0.501 4.501 12 H 0.068 0.932 13 C -0.153 4.153 14 N -0.543 5.543 15 Si 0.753 3.247 16 H -0.171 1.171 17 H -0.221 1.221 18 H -0.189 1.189 19 C -0.137 4.137 20 C -0.145 4.145 21 H 0.156 0.844 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.770 -11.737 -0.275 15.932 hybrid contribution -0.467 0.274 -0.521 0.751 sum -11.237 -11.464 -0.796 16.072 Atomic orbital electron populations 1.23570 0.74171 1.05863 1.02582 1.86541 1.25505 1.31495 1.84692 1.19948 0.86906 0.81847 0.72612 1.90800 1.65943 1.36693 1.49030 1.18426 0.86216 0.88403 1.25869 1.41122 1.04520 1.07937 1.57051 0.73234 1.21813 0.85844 0.94569 1.08968 1.20203 0.91576 0.97335 1.03032 1.17437 0.91386 0.91474 1.04421 1.18254 1.04569 1.11701 1.15566 0.93177 1.26123 0.96149 0.93543 0.99463 1.69790 1.34496 1.13433 1.36537 0.86285 0.79700 0.80143 0.78607 1.17065 1.22050 1.18936 1.20222 0.94026 0.93683 1.05813 1.20505 1.00231 0.92500 1.01300 0.84396 0.91911 0.92092 0.90533 0.91206 0.89304 0.91516 0.92516 0.91010 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.57 113.37 1.20 1.82 16 2 O -0.37 -10.55 10.58 -57.86 -0.61 -11.16 16 3 C 0.54 20.18 7.94 70.04 0.56 20.74 16 4 O -0.53 -22.07 14.60 19.51 0.28 -21.79 16 5 C -0.08 -3.28 7.01 39.94 0.28 -3.00 16 6 N -0.51 -17.91 6.01 -170.63 -1.03 -18.94 16 7 H 0.43 11.19 8.96 -92.71 -0.83 10.35 16 8 C 0.01 0.29 7.26 42.49 0.31 0.60 16 9 C -0.06 -2.00 10.20 71.24 0.73 -1.27 16 10 C -0.04 -2.07 4.59 -21.28 -0.10 -2.17 16 11 C -0.47 -26.41 9.28 23.43 0.22 -26.20 16 12 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 13 C 0.05 2.98 5.10 85.16 0.43 3.42 16 14 N -0.91 -54.09 13.94 21.79 0.30 -53.78 16 15 Si 0.93 45.78 23.70 68.60 1.63 47.40 16 16 H -0.25 -11.53 5.40 99.48 0.54 -11.00 16 17 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 18 H -0.26 -13.28 6.86 99.48 0.68 -12.60 16 19 C -0.13 -6.07 4.84 -19.44 -0.09 -6.16 16 20 C -0.09 -4.17 7.42 71.24 0.53 -3.64 16 21 H 0.14 1.61 8.14 -2.38 -0.02 1.59 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.07 2.42 8.06 -2.39 -0.02 2.40 16 26 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.28 15.25 8.30 -92.71 -0.77 14.48 16 28 H 0.06 2.66 4.84 -2.38 -0.01 2.65 16 29 H 0.07 3.17 6.74 -2.39 -0.02 3.16 16 30 H 0.05 2.75 7.33 -2.38 -0.02 2.73 16 Total: -1.00 -68.84 255.39 4.77 -64.07 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.14 Total: 10.07 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.06 Total: -15.87 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -0.72 Total: -72.72 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.33 Total: -32.95 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.63 Total: 47.40 kcal Total: -68.84 4.77 -64.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257848.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.634 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds