Wall clock time and date at job start Mon Mar 30 2020 02:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 C 1.33651 * 122.74743 * 84.70404 * 12 2 1 14 14 S 1.76198 * 107.92236 * 179.97438 * 13 12 2 15 15 C 1.70980 * 90.28510 * 0.27920 * 14 13 12 16 16 C 1.50697 * 124.91938 * 179.83949 * 15 14 13 17 17 C 1.53004 * 117.49445 * 8.74484 * 16 15 14 18 18 C 1.52998 * 117.49793 * 300.08907 * 16 15 14 19 19 N 1.29032 * 110.16440 * 359.83776 * 15 14 13 20 20 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 21 21 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 23 23 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 24 24 H 1.07994 * 126.03481 * 0.04556 * 13 12 2 25 25 H 1.08997 * 115.55195 * 154.41364 * 16 15 14 26 26 H 1.08993 * 117.50195 * 359.97438 * 17 16 15 27 27 H 1.09000 * 117.49418 * 145.02059 * 17 16 15 28 28 H 1.09002 * 117.49379 * 214.98146 * 18 16 15 29 29 H 1.08999 * 117.49800 * 359.96782 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 6 2.1756 -2.0378 1.2910 14 16 2.7835 -2.4450 2.8939 15 6 2.7768 -0.7907 3.3260 16 6 3.1965 -0.2479 4.6677 17 6 3.8543 -1.2205 5.6488 18 6 2.4254 -0.7310 5.8978 19 7 2.3604 -0.0743 2.3369 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9026 -0.5282 -4.4376 24 1 1.9584 -2.7371 0.4973 25 1 3.5497 0.7832 4.6681 26 1 3.9830 -2.2529 5.3240 27 1 4.6400 -0.8289 6.2949 28 1 2.2717 -0.0177 6.7075 29 1 1.6143 -1.4410 5.7365 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263591.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:25 Heat of formation + Delta-G solvation = 66.796940 kcal Electronic energy + Delta-G solvation = -12785.604132 eV Core-core repulsion = 10608.474192 eV Total energy + Delta-G solvation = -2177.129940 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.42490 -37.18968 -34.18745 -31.45086 -28.78603 -25.46921 -24.99606 -22.64676 -22.49348 -20.39453 -18.87678 -17.20928 -16.29408 -15.75697 -14.99023 -14.58691 -13.82333 -13.66668 -13.05858 -12.72375 -12.21896 -12.06314 -11.80275 -11.64045 -11.23928 -10.91012 -10.69497 -10.54414 -10.38831 -9.95137 -9.48191 -9.20992 -9.01381 -8.79519 -8.61851 -7.94791 -6.11483 -4.12082 1.28171 1.87375 2.29541 3.26416 3.38281 3.40454 3.41162 3.87772 4.21196 4.38602 4.72782 4.87606 5.19724 5.24383 5.47546 5.53927 5.76468 5.94250 5.98633 6.08651 6.25641 6.39862 6.44046 6.62019 6.93862 7.04201 7.36521 7.65057 8.40190 8.49311 8.89586 9.49140 11.00918 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.053197 B = 0.007357 C = 0.006866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.217263 B = 3804.766020 C = 4076.942156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.077 3.923 3 H 0.046 0.954 4 C -0.516 4.516 5 H 0.079 0.921 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.264 1.264 11 H -0.296 1.296 12 C 0.106 3.894 13 C -0.229 4.229 14 S 0.057 5.943 15 C 0.065 3.935 16 C -0.076 4.076 17 C -0.172 4.172 18 C -0.164 4.164 19 N -0.466 5.466 20 H 0.045 0.955 21 H 0.052 0.948 22 H 0.032 0.968 23 H 0.265 0.735 24 H 0.182 0.818 25 H 0.129 0.871 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.328 -1.304 16.052 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.055 3.945 3 H 0.064 0.936 4 C -0.554 4.554 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.189 1.189 11 H -0.224 1.224 12 C -0.023 4.023 13 C -0.367 4.367 14 S 0.310 5.690 15 C -0.213 4.213 16 C -0.098 4.098 17 C -0.210 4.210 18 C -0.202 4.202 19 N -0.180 5.180 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.199 0.801 25 H 0.146 0.854 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.573 -1.669 16.391 16.485 hybrid contribution -0.858 1.166 -1.135 1.840 sum -0.286 -0.503 15.255 15.266 Atomic orbital electron populations 1.22099 0.97821 1.00902 0.98903 1.17909 0.91784 0.96403 0.88426 0.93646 1.21002 1.32466 1.13793 0.88125 0.90313 1.24945 0.95624 0.96638 0.95680 1.69881 1.45370 1.40303 0.97951 0.86848 0.80529 0.83817 0.77115 1.20470 1.18902 1.22385 1.20647 0.97789 0.90309 0.93554 1.26900 1.10660 1.00343 0.98796 1.83462 1.63598 1.11306 1.10609 1.25894 1.04410 0.92798 0.98240 1.20321 1.05045 0.99788 0.84627 1.23122 0.96407 0.99442 1.01986 1.23109 0.95181 1.03645 0.98308 1.66047 1.13319 1.38893 0.99778 0.93677 0.92841 0.94907 0.92502 0.80115 0.85369 0.88320 0.87652 0.87863 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.66 37.16 0.32 -2.83 15 2 C 0.08 1.89 2.30 -92.92 -0.21 1.68 15 3 H 0.05 1.18 7.20 -51.93 -0.37 0.81 15 4 C -0.52 -14.41 8.68 -34.44 -0.30 -14.71 15 5 H 0.08 2.34 6.85 -52.49 -0.36 1.98 15 6 C 0.07 2.10 5.45 -17.82 -0.10 2.00 15 7 N -0.90 -27.15 13.96 55.43 0.77 -26.38 15 8 Si 0.89 22.00 24.37 -169.99 -4.14 17.85 15 9 H -0.28 -6.66 6.87 56.52 0.39 -6.27 15 10 H -0.26 -6.38 6.53 56.52 0.37 -6.01 15 11 H -0.30 -7.34 7.11 56.52 0.40 -6.94 15 12 C 0.11 2.39 5.72 -84.22 -0.48 1.91 15 13 C -0.23 -4.68 10.07 29.12 0.29 -4.38 15 14 S 0.06 0.93 21.94 -107.50 -2.36 -1.43 15 15 C 0.06 1.12 7.04 -13.46 -0.09 1.03 15 16 C -0.08 -0.99 6.33 -91.77 -0.58 -1.58 15 17 C -0.17 -1.71 10.02 -26.69 -0.27 -1.98 15 18 C -0.16 -1.67 10.24 -26.70 -0.27 -1.95 15 19 N -0.47 -9.85 10.53 -8.05 -0.08 -9.93 15 20 H 0.04 1.04 3.27 -51.93 -0.17 0.87 15 21 H 0.05 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.03 0.67 8.14 -51.93 -0.42 0.24 15 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 24 H 0.18 3.69 7.35 -52.49 -0.39 3.31 15 25 H 0.13 1.61 8.14 -51.93 -0.42 1.19 15 26 H 0.10 1.00 7.23 -51.93 -0.38 0.63 15 27 H 0.11 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.10 0.85 8.14 -51.93 -0.42 0.42 15 29 H 0.10 1.04 8.14 -51.93 -0.42 0.61 15 LS Contribution 254.86 15.07 3.84 3.84 Total: -1.00 -30.65 254.86 -7.05 -37.69 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -3.38 Total: -0.84 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -1.69 Total: -20.80 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.69 Total: -36.31 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.85 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.36 Total: -1.43 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.65 -7.05 -37.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263591.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.491 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds