Wall clock time and date at job start Mon Mar 30 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99883 * 2 1 4 4 H 1.48504 * 109.46968 * 239.99612 * 3 2 1 5 5 H 1.48495 * 109.47545 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46905 * 120.00004 * 3 2 1 7 7 C 1.37878 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00058 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.46903 * 60.00531 * 9 7 2 11 11 C 1.52999 * 109.47246 * 180.02562 * 9 7 2 12 12 H 1.08998 * 110.59207 * 66.72334 * 11 9 7 13 13 C 1.54941 * 110.66497 * 303.72698 * 11 9 7 14 14 C 1.54602 * 102.92053 * 204.14826 * 13 11 9 15 15 C 1.53997 * 105.13871 * 21.95431 * 14 13 11 16 16 N 1.47903 * 107.22402 * 1.12741 * 15 14 13 17 17 C 1.52997 * 109.47459 * 300.00283 * 9 7 2 18 18 F 1.39901 * 109.47109 * 306.81985 * 17 9 7 19 19 F 1.39898 * 109.47241 * 66.81762 * 17 9 7 20 20 F 1.39899 * 109.47151 * 186.81763 * 17 9 7 21 21 H 0.97005 * 120.00124 * 359.97438 * 1 2 3 22 22 H 1.08994 * 110.72419 * 85.79431 * 13 11 9 23 23 H 1.08999 * 110.87895 * 322.57219 * 13 11 9 24 24 H 1.09001 * 110.30653 * 263.04015 * 14 13 11 25 25 H 1.08997 * 110.30742 * 140.87123 * 14 13 11 26 26 H 1.09000 * 109.91462 * 120.57737 * 15 14 13 27 27 H 1.09002 * 109.91928 * 241.67491 * 15 14 13 28 28 H 1.00902 * 110.99796 * 95.28262 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6240 -2.5575 -0.8880 11 6 2.2451 -3.6621 0.0027 12 1 2.8007 -3.6907 0.9401 13 6 3.2122 -3.5558 -1.2031 14 6 3.6695 -5.0182 -1.4095 15 6 2.5740 -5.8786 -0.7528 16 7 1.5442 -4.9536 -0.2318 17 6 0.3717 -2.5794 1.2512 18 9 1.1544 -2.3493 2.3877 19 9 -0.6359 -1.6119 1.1754 20 9 -0.2073 -3.8503 1.3332 21 1 -0.4850 0.8401 0.0004 22 1 4.0614 -2.9167 -0.9612 23 1 2.6922 -3.1860 -2.0867 24 1 4.6282 -5.1875 -0.9193 25 1 3.7421 -5.2453 -2.4731 26 1 2.1331 -6.5465 -1.4927 27 1 2.9991 -6.4599 0.0655 28 1 0.7914 -4.8406 -0.8942 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261266342.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:23 Heat of formation + Delta-G solvation = -146.022211 kcal Electronic energy + Delta-G solvation = -16620.244030 eV Core-core repulsion = 13449.275947 eV Total energy + Delta-G solvation = -3170.968083 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.21246 -45.83326 -45.47375 -38.13570 -33.59401 -30.83184 -29.40521 -26.55398 -24.45067 -21.79244 -20.41740 -19.78242 -17.08771 -16.61135 -16.28335 -15.89747 -14.95553 -14.51507 -14.32216 -13.46775 -13.21889 -12.69326 -12.60091 -12.26460 -12.17244 -11.89462 -11.74616 -11.56260 -11.25633 -11.03616 -10.89407 -10.68484 -10.59027 -10.31236 -9.93772 -9.58966 -9.25359 -8.57627 -8.01640 -6.11220 -4.30578 3.25165 3.30571 3.32464 4.27975 4.65575 4.82335 5.08572 5.19770 5.27404 5.55945 5.69965 5.90660 5.96699 6.04692 6.05792 6.28844 6.31158 6.42144 6.59967 6.67168 6.82619 7.18739 7.39069 7.73193 7.84068 8.04236 8.68056 9.35609 10.82927 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.029400 B = 0.013252 C = 0.010118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.160758 B = 2112.317205 C = 2766.607551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.071 0.929 9 C 0.020 3.980 10 H 0.060 0.940 11 C 0.082 3.918 12 H 0.084 0.916 13 C -0.131 4.131 14 C -0.156 4.156 15 C 0.042 3.958 16 N -0.669 5.669 17 C 0.435 3.565 18 F -0.207 7.207 19 F -0.150 7.150 20 F -0.215 7.215 21 H 0.265 0.735 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.477 -6.107 -2.062 7.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.145 4.145 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.089 0.911 9 C -0.001 4.001 10 H 0.078 0.922 11 C -0.028 4.028 12 H 0.102 0.898 13 C -0.170 4.170 14 C -0.195 4.195 15 C -0.088 4.088 16 N -0.296 5.296 17 C 0.380 3.620 18 F -0.189 7.189 19 F -0.131 7.131 20 F -0.196 7.196 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.240 -6.235 -1.327 7.151 hybrid contribution 0.445 1.243 -0.665 1.478 sum 3.685 -4.992 -1.992 6.517 Atomic orbital electron populations 1.70348 1.05710 1.26981 1.45378 1.25146 0.95089 0.99935 0.94352 0.86463 0.79498 0.82190 0.78813 1.19999 1.21099 1.19944 1.20704 0.93413 0.88349 1.54305 0.91128 1.19969 0.93422 0.95226 0.91437 0.92224 1.22763 0.94291 0.87692 0.98020 0.89803 1.22907 1.00075 0.94660 0.99350 1.22861 0.99515 0.96858 1.00277 1.22690 0.92540 0.95894 0.97703 1.63062 1.09567 1.09894 1.47101 1.22215 0.80694 0.72040 0.87037 1.92983 1.75584 1.94586 1.55699 1.93330 1.62156 1.61604 1.96054 1.93059 1.86380 1.43242 1.96963 0.92491 0.90925 0.91284 0.91941 0.92219 0.92488 0.91407 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.62 9.61 55.43 0.53 -23.08 15 2 C 0.06 1.64 5.28 -17.82 -0.09 1.54 15 3 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 15 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 15 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 15 7 C -0.53 -13.67 7.56 -34.44 -0.26 -13.94 15 8 H 0.07 1.77 6.98 -52.48 -0.37 1.40 15 9 C 0.02 0.47 1.61 -91.77 -0.15 0.32 15 10 H 0.06 1.50 8.01 -51.93 -0.42 1.08 15 11 C 0.08 1.65 2.65 -65.63 -0.17 1.48 15 12 H 0.08 1.81 7.90 -51.93 -0.41 1.40 15 13 C -0.13 -2.31 5.62 -24.87 -0.14 -2.45 15 14 C -0.16 -2.25 6.93 -25.37 -0.18 -2.42 15 15 C 0.04 0.63 7.51 -2.75 -0.02 0.60 15 16 N -0.67 -12.24 5.86 -102.98 -0.60 -12.85 15 17 C 0.43 11.01 2.66 37.16 0.10 11.11 15 18 F -0.21 -5.35 16.53 2.25 0.04 -5.31 15 19 F -0.15 -4.15 13.28 2.25 0.03 -4.12 15 20 F -0.21 -5.10 15.62 2.25 0.04 -5.07 15 21 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 22 H 0.07 1.29 7.64 -51.93 -0.40 0.89 15 23 H 0.07 1.26 8.06 -51.93 -0.42 0.84 15 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 28 H 0.33 5.99 8.53 -39.29 -0.34 5.66 15 LS Contribution 239.58 15.07 3.61 3.61 Total: -1.00 -27.55 239.58 -5.46 -33.01 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.17 Total: 1.93 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -0.91 Total: -3.75 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.07 Total: -35.93 kcal Atomic # 9 Polarization: -14.60 SS G_CDS: 0.10 Total: -14.50 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.55 -5.46 -33.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266342.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.011 kcal (2) G-P(sol) polarization free energy of solvation -27.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds