Wall clock time and date at job start Mon Mar 30 2020 02:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99883 * 2 1 4 4 H 1.48504 * 109.46968 * 239.99612 * 3 2 1 5 5 H 1.48495 * 109.47545 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46905 * 120.00004 * 3 2 1 7 7 C 1.37878 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00058 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.46903 * 60.00531 * 9 7 2 11 11 C 1.52999 * 109.47246 * 180.02562 * 9 7 2 12 12 H 1.08998 * 110.59207 * 66.72334 * 11 9 7 13 13 C 1.54941 * 110.66497 * 303.72698 * 11 9 7 14 14 C 1.54602 * 102.92053 * 204.14826 * 13 11 9 15 15 C 1.53997 * 105.13871 * 21.95431 * 14 13 11 16 16 N 1.47903 * 107.22402 * 1.12741 * 15 14 13 17 17 C 1.52997 * 109.47459 * 300.00283 * 9 7 2 18 18 F 1.39901 * 109.47109 * 306.81985 * 17 9 7 19 19 F 1.39898 * 109.47241 * 66.81762 * 17 9 7 20 20 F 1.39899 * 109.47151 * 186.81763 * 17 9 7 21 21 H 0.97005 * 120.00124 * 359.97438 * 1 2 3 22 22 H 1.08994 * 110.72419 * 85.79431 * 13 11 9 23 23 H 1.08999 * 110.87895 * 322.57219 * 13 11 9 24 24 H 1.09001 * 110.30653 * 263.04015 * 14 13 11 25 25 H 1.08997 * 110.30742 * 140.87123 * 14 13 11 26 26 H 1.09000 * 109.91462 * 120.57737 * 15 14 13 27 27 H 1.09002 * 109.91928 * 241.67491 * 15 14 13 28 28 H 1.00902 * 110.99796 * 95.28262 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6240 -2.5575 -0.8880 11 6 2.2451 -3.6621 0.0027 12 1 2.8007 -3.6907 0.9401 13 6 3.2122 -3.5558 -1.2031 14 6 3.6695 -5.0182 -1.4095 15 6 2.5740 -5.8786 -0.7528 16 7 1.5442 -4.9536 -0.2318 17 6 0.3717 -2.5794 1.2512 18 9 1.1544 -2.3493 2.3877 19 9 -0.6359 -1.6119 1.1754 20 9 -0.2073 -3.8503 1.3332 21 1 -0.4850 0.8401 0.0004 22 1 4.0614 -2.9167 -0.9612 23 1 2.6922 -3.1860 -2.0867 24 1 4.6282 -5.1875 -0.9193 25 1 3.7421 -5.2453 -2.4731 26 1 2.1331 -6.5465 -1.4927 27 1 2.9991 -6.4599 0.0655 28 1 0.7914 -4.8406 -0.8942 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266342.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:22 Heat of formation + Delta-G solvation = -163.023546 kcal Electronic energy + Delta-G solvation = -16620.981263 eV Core-core repulsion = 13449.275947 eV Total energy + Delta-G solvation = -3171.705316 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.25862 -47.86116 -47.57307 -39.57536 -35.48568 -32.63023 -30.76922 -28.13530 -26.45955 -23.55852 -21.85559 -21.31186 -19.09216 -18.57868 -18.29135 -17.67525 -16.75169 -16.04917 -15.91091 -15.11360 -14.69867 -14.56838 -14.50201 -14.27495 -14.10435 -13.88719 -13.81722 -13.31533 -12.90176 -12.63298 -12.50859 -12.44750 -12.00819 -11.92243 -11.46470 -11.27456 -11.14088 -10.59489 -9.42685 -8.12954 -6.37388 1.43963 1.46252 1.53417 2.38514 2.66595 3.05332 3.39756 3.75236 3.94920 3.98540 4.03089 4.22917 4.34507 4.55468 4.69885 4.79953 4.86468 5.05350 5.15441 5.26377 5.32638 5.48473 5.68214 5.85482 6.06239 6.53590 6.66249 7.31797 8.80957 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.029400 B = 0.013252 C = 0.010118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.160758 B = 2112.317205 C = 2766.607551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.013 3.987 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.044 0.956 11 C 0.085 3.915 12 H 0.069 0.931 13 C -0.128 4.128 14 C -0.144 4.144 15 C 0.041 3.959 16 N -0.681 5.681 17 C 0.430 3.570 18 F -0.212 7.212 19 F -0.166 7.166 20 F -0.206 7.206 21 H 0.263 0.737 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.799 -6.756 -2.706 8.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.093 0.907 9 C 0.002 3.998 10 H 0.062 0.938 11 C -0.024 4.024 12 H 0.088 0.912 13 C -0.168 4.168 14 C -0.183 4.183 15 C -0.089 4.089 16 N -0.309 5.309 17 C 0.376 3.624 18 F -0.194 7.194 19 F -0.147 7.147 20 F -0.188 7.188 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.576 -6.903 -1.977 8.515 hybrid contribution 0.004 1.383 -0.441 1.451 sum 4.580 -5.520 -2.418 7.570 Atomic orbital electron populations 1.70476 1.07024 1.27487 1.46594 1.25932 0.95834 1.03194 0.94144 0.85523 0.78304 0.78303 0.79088 1.18697 1.21137 1.19883 1.21020 0.93780 0.89201 1.53589 0.90698 1.19925 0.93588 0.96455 0.89862 0.93844 1.22574 0.93821 0.87420 0.98616 0.91234 1.22847 0.99158 0.97138 0.97630 1.22797 0.99750 0.93930 1.01843 1.22807 0.91943 0.95521 0.98615 1.63013 1.10587 1.09280 1.48036 1.22440 0.80566 0.71990 0.87428 1.92964 1.75673 1.94663 1.56054 1.93297 1.62885 1.62421 1.96142 1.93064 1.86272 1.42485 1.96951 0.92748 0.91239 0.92176 0.90557 0.90048 0.90076 0.90784 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.41 9.61 21.45 0.21 -49.20 15 2 C 0.01 0.66 5.28 84.66 0.45 1.11 15 3 Si 0.96 42.01 29.54 68.60 2.03 44.03 15 4 H -0.26 -10.84 7.11 99.48 0.71 -10.14 15 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 15 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 7 C -0.54 -27.69 7.56 25.60 0.19 -27.49 15 8 H 0.07 3.70 6.98 -2.91 -0.02 3.68 15 9 C 0.02 1.05 1.61 -11.54 -0.02 1.03 15 10 H 0.04 2.22 8.01 -2.39 -0.02 2.20 15 11 C 0.09 3.39 2.65 45.21 0.12 3.51 15 12 H 0.07 2.96 7.90 -2.39 -0.02 2.94 15 13 C -0.13 -4.32 5.62 31.80 0.18 -4.14 15 14 C -0.14 -3.69 6.93 31.48 0.22 -3.47 15 15 C 0.04 1.09 7.51 86.45 0.65 1.74 15 16 N -0.68 -23.94 5.86 -479.72 -2.81 -26.75 15 17 C 0.43 21.94 2.66 71.98 0.19 22.13 15 18 F -0.21 -10.99 16.53 44.97 0.74 -10.25 15 19 F -0.17 -9.33 13.28 44.97 0.60 -8.73 15 20 F -0.21 -9.76 15.62 44.97 0.70 -9.06 15 21 H 0.26 14.19 8.31 -92.70 -0.77 13.42 15 22 H 0.07 2.35 7.64 -2.39 -0.02 2.33 15 23 H 0.06 2.11 8.06 -2.39 -0.02 2.09 15 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 28 H 0.33 11.63 8.53 -89.69 -0.77 10.87 15 Total: -1.00 -57.62 239.58 3.85 -53.77 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.41 Total: 11.77 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 1.98 Total: -5.58 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -2.60 Total: -75.95 kcal Atomic # 9 Polarization: -30.08 SS G_CDS: 2.04 Total: -28.03 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -57.62 3.85 -53.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266342.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.255 kcal (2) G-P(sol) polarization free energy of solvation -57.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds