Wall clock time and date at job start Mon Mar 30 2020 03:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00329 * 2 1 4 4 H 1.48506 * 109.47164 * 239.99844 * 3 2 1 5 5 H 1.48498 * 109.47277 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47168 * 120.00353 * 3 2 1 7 7 C 1.37884 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99704 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47362 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.90475 * 306.10253 * 10 9 7 12 12 N 1.48321 * 109.87917 * 67.36193 * 10 9 7 13 13 C 1.48537 * 105.60420 * 94.08432 * 12 10 9 14 14 C 1.54936 * 103.37541 * 39.18306 * 13 12 10 15 15 C 1.53987 * 109.91948 * 185.00032 * 10 9 7 16 16 H 1.09001 * 110.31098 * 0.79094 * 15 10 9 17 17 C 1.53004 * 110.30877 * 122.95866 * 15 10 9 18 18 F 1.39899 * 109.47236 * 177.17249 * 17 15 10 19 19 F 1.39900 * 109.46654 * 297.16766 * 17 15 10 20 20 F 1.39899 * 109.47349 * 57.16861 * 17 15 10 21 21 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46912 * 59.99853 * 9 7 2 23 23 H 1.08995 * 109.47323 * 299.99922 * 9 7 2 24 24 H 1.00898 * 111.19789 * 333.58947 * 12 10 9 25 25 H 1.09002 * 110.66696 * 280.66311 * 13 12 10 26 26 H 1.09001 * 110.66368 * 157.70151 * 13 12 10 27 27 H 1.08998 * 110.72698 * 80.86591 * 14 13 12 28 28 H 1.09007 * 110.72188 * 203.96563 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 1 2.9452 -3.5519 -0.8275 12 7 2.9809 -3.6967 1.2879 13 6 2.2301 -4.6433 2.1520 14 6 1.8157 -5.7705 1.1731 15 6 1.4897 -4.9981 -0.1257 16 1 0.4169 -4.8205 -0.2011 17 6 1.9872 -5.7763 -1.3454 18 9 1.3363 -7.0132 -1.4067 19 9 1.7131 -5.0471 -2.5074 20 9 3.3670 -5.9803 -1.2374 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 3.0244 -2.7803 1.7079 25 1 1.3503 -4.1606 2.5776 26 1 2.8717 -5.0355 2.9410 27 1 2.6407 -6.4645 1.0125 28 1 0.9362 -6.2981 1.5425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:58 Heat of formation + Delta-G solvation = -169.979030 kcal Electronic energy + Delta-G solvation = -16072.035004 eV Core-core repulsion = 12900.028075 eV Total energy + Delta-G solvation = -3172.006928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.74822 -47.25935 -47.17313 -38.35570 -33.12924 -30.82857 -30.24195 -26.77394 -24.58614 -22.54557 -20.78871 -19.90452 -18.07005 -17.80086 -17.29797 -16.11321 -15.65100 -14.52240 -14.43178 -14.08865 -14.05848 -13.65007 -13.40466 -13.36182 -12.71279 -12.58019 -12.34705 -11.86890 -11.61671 -11.56393 -11.07262 -10.98995 -10.74326 -10.57270 -10.21554 -9.77036 -9.22281 -8.47673 -7.80002 -6.11145 -4.15144 3.13012 3.29194 3.33821 3.36798 4.15358 4.28976 4.35651 4.44468 4.84673 5.04632 5.18414 5.27929 5.49959 5.65923 5.78360 5.95894 6.09243 6.27373 6.41816 6.57591 7.17358 7.48888 7.60921 7.85838 8.03333 8.25088 8.91434 9.50582 10.99825 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.038199 B = 0.008462 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.824483 B = 3308.303984 C = 3570.459392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.003 3.997 10 C 0.084 3.916 11 H 0.082 0.918 12 N -0.664 5.664 13 C 0.040 3.960 14 C -0.115 4.115 15 C -0.148 4.148 16 H 0.116 0.884 17 C 0.458 3.542 18 F -0.192 7.192 19 F -0.181 7.181 20 F -0.180 7.180 21 H 0.262 0.738 22 H 0.024 0.976 23 H 0.019 0.981 24 H 0.355 0.645 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -10.622 1.324 10.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.035 4.035 10 C -0.025 4.025 11 H 0.100 0.900 12 N -0.295 5.295 13 C -0.090 4.090 14 C -0.153 4.153 15 C -0.168 4.168 16 H 0.134 0.866 17 C 0.404 3.596 18 F -0.174 7.174 19 F -0.162 7.162 20 F -0.161 7.161 21 H 0.072 0.928 22 H 0.043 0.957 23 H 0.037 0.963 24 H 0.174 0.826 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.734 -10.959 1.091 11.348 hybrid contribution -0.458 1.343 -0.103 1.423 sum 2.276 -9.616 0.988 9.931 Atomic orbital electron populations 1.69951 1.06156 1.26989 1.50051 1.25017 0.94830 0.99411 0.94902 0.86599 0.79530 0.82772 0.78796 1.20122 1.21340 1.20087 1.21113 0.93201 0.90493 1.51607 0.92073 1.19715 0.94055 0.91764 0.97941 1.22451 0.95177 0.91267 0.93637 0.89990 1.63401 1.47802 1.14852 1.03491 1.22925 0.96990 0.93406 0.95699 1.22511 1.01692 0.97839 0.93231 1.23569 1.03818 0.97777 0.91628 0.86565 1.20577 0.75518 0.77722 0.85809 1.93134 1.81473 1.45903 1.96891 1.93194 1.93501 1.77231 1.52314 1.93162 1.31645 1.95149 1.96171 0.92793 0.95722 0.96299 0.82573 0.93755 0.90442 0.90333 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.18 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 15 7 C -0.53 -14.10 8.21 -34.44 -0.28 -14.38 15 8 H 0.06 1.61 7.70 -52.48 -0.40 1.20 15 9 C 0.00 0.08 4.28 -27.89 -0.12 -0.04 15 10 C 0.08 1.69 2.66 -66.41 -0.18 1.52 15 11 H 0.08 1.77 7.34 -51.93 -0.38 1.39 15 12 N -0.66 -12.33 7.40 -102.83 -0.76 -13.09 15 13 C 0.04 0.61 7.52 -1.90 -0.01 0.59 15 14 C -0.11 -1.64 6.34 -24.87 -0.16 -1.79 15 15 C -0.15 -2.48 2.65 -89.27 -0.24 -2.72 15 16 H 0.12 1.93 7.69 -51.93 -0.40 1.53 15 17 C 0.46 7.60 2.50 37.16 0.09 7.69 15 18 F -0.19 -2.96 17.11 2.25 0.04 -2.92 15 19 F -0.18 -3.28 17.02 2.25 0.04 -3.24 15 20 F -0.18 -3.07 16.08 2.25 0.04 -3.03 15 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 22 H 0.02 0.65 8.14 -51.93 -0.42 0.22 15 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 24 H 0.36 7.02 7.63 -39.29 -0.30 6.72 15 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 15 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 27 H 0.08 1.09 7.35 -51.93 -0.38 0.71 15 28 H 0.08 0.93 8.14 -51.92 -0.42 0.51 15 LS Contribution 248.09 15.07 3.74 3.74 Total: -1.00 -28.14 248.09 -5.30 -33.44 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -3.11 Total: 1.76 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.99 Total: -7.56 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.02 Total: -38.27 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 0.11 Total: -9.19 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.14 -5.30 -33.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.539 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds