Wall clock time and date at job start Mon Mar 30 2020 03:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34888 * 116.99886 * 2 1 4 4 O 1.21621 * 120.00091 * 0.02562 * 3 2 1 5 5 C 1.46495 * 120.00064 * 179.97438 * 3 2 1 6 6 C 1.37987 * 126.26625 * 180.02562 * 5 3 2 7 7 C 1.39799 * 106.97300 * 180.02562 * 6 5 3 8 8 C 1.50697 * 126.08277 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47567 * 265.02930 * 8 7 6 10 10 H 1.08006 * 119.99889 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00084 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99961 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 120.00035 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47130 * 90.00085 * 13 11 9 15 15 H 1.48499 * 109.47088 * 210.00086 * 13 11 9 16 16 H 1.48498 * 109.47473 * 330.00236 * 13 11 9 17 17 C 1.35487 * 107.83801 * 359.97438 * 7 6 5 18 18 C 1.50703 * 125.50500 * 180.02562 * 17 7 6 19 19 N 1.34954 * 108.98611 * 0.26234 * 17 7 6 20 20 H 0.97008 * 125.63623 * 179.73435 * 19 17 7 21 21 H 1.09004 * 109.47249 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47048 * 300.00000 * 1 2 3 23 23 H 1.09004 * 109.47257 * 60.00362 * 1 2 3 24 24 H 1.08009 * 126.51783 * 0.03214 * 6 5 3 25 25 H 1.09001 * 109.46849 * 25.03139 * 8 7 6 26 26 H 1.09001 * 109.47287 * 145.02287 * 8 7 6 27 27 H 0.96998 * 119.99951 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.47152 * 89.99931 * 18 17 7 29 29 H 1.09001 * 109.46980 * 330.00031 * 18 17 7 30 30 H 1.09004 * 109.47113 * 210.00012 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2219 0.0005 5 6 3.5273 1.2786 0.0006 6 6 4.2842 2.4324 0.0011 7 6 5.6260 2.0402 0.0009 8 6 6.8196 2.9602 0.0008 9 6 7.2925 3.1695 -1.4146 10 1 6.7802 2.6844 -2.2324 11 6 8.3797 3.9794 -1.6655 12 7 8.7927 4.1617 -2.9008 13 14 9.2661 4.8178 -0.2511 14 1 10.3522 3.9350 0.2453 15 1 9.8473 6.1006 -0.7219 16 1 8.3037 5.0842 0.8480 17 6 5.6626 0.6858 0.0009 18 6 6.9126 -0.1560 0.0012 19 7 4.3988 0.2125 -0.0049 20 1 4.1460 -0.7241 -0.0098 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 3.9109 3.4459 0.0017 25 1 6.5389 3.9195 0.4358 26 1 7.6215 2.5151 0.5898 27 1 9.5579 4.7312 -3.0773 28 1 7.2136 -0.3590 1.0290 29 1 7.7112 0.3793 -0.5123 30 1 6.7170 -1.0971 -0.5128 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261280486.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:39 Heat of formation + Delta-G solvation = -52.910863 kcal Electronic energy + Delta-G solvation = -14727.367138 eV Core-core repulsion = 12102.293407 eV Total energy + Delta-G solvation = -2625.073731 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.04794 -39.67570 -36.26503 -33.49016 -31.58754 -31.15530 -28.27275 -27.99719 -25.90209 -22.80438 -21.85141 -19.94985 -18.68564 -17.78094 -16.74852 -16.69708 -16.28842 -15.00149 -14.36180 -14.04192 -13.58805 -13.15391 -13.07445 -12.66298 -12.59423 -12.14539 -12.05811 -11.90118 -11.54398 -11.10144 -10.81609 -10.56543 -10.37356 -10.24300 -9.98641 -9.31205 -8.51064 -8.20399 -7.41552 -6.00212 -3.97814 1.54817 2.76191 3.13224 3.33090 3.41667 3.45749 3.52460 3.64263 4.48128 5.01529 5.08147 5.10196 5.31313 5.37775 5.43985 5.61487 5.85030 5.96208 6.05991 6.33910 6.48914 6.53981 6.80535 7.08301 7.11919 7.44207 7.64975 7.78698 7.85621 7.96398 8.60641 9.07112 9.61346 11.13099 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.043867 B = 0.006445 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.143771 B = 4343.213533 C = 4606.472492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.370 6.370 3 C 0.539 3.461 4 O -0.509 6.509 5 C -0.074 4.074 6 C -0.080 4.080 7 C -0.124 4.124 8 C 0.046 3.954 9 C -0.508 4.508 10 H 0.072 0.928 11 C 0.067 3.933 12 N -0.904 5.904 13 Si 0.876 3.124 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.264 1.264 17 C 0.060 3.940 18 C -0.089 4.089 19 N -0.533 5.533 20 H 0.414 0.586 21 H 0.098 0.902 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.146 0.854 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.263 0.737 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 -10.511 7.537 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.287 6.287 3 C 0.386 3.614 4 O -0.398 6.398 5 C -0.183 4.183 6 C -0.107 4.107 7 C -0.130 4.130 8 C 0.009 3.991 9 C -0.546 4.546 10 H 0.090 0.910 11 C -0.134 4.134 12 N -0.543 5.543 13 Si 0.703 3.297 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.188 1.188 17 C -0.057 4.057 18 C -0.146 4.146 19 N -0.130 5.130 20 H 0.251 0.749 21 H 0.116 0.884 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.164 0.836 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.302 -10.268 7.424 16.330 hybrid contribution 0.093 0.103 0.489 0.508 sum -10.209 -10.165 7.913 16.437 Atomic orbital electron populations 1.23197 0.76326 1.03301 1.02605 1.86560 1.23455 1.33423 1.85287 1.19912 0.87171 0.81341 0.72938 1.90871 1.65549 1.35781 1.47551 1.19000 0.85674 0.88675 1.24930 1.21317 0.92167 0.96448 1.00777 1.19702 0.95241 0.92366 1.05671 1.18196 0.89840 0.93070 0.98022 1.21030 1.13303 1.28885 0.91366 0.90961 1.25005 0.96896 0.96125 0.95366 1.69910 1.26384 1.39006 1.18979 0.86834 0.80248 0.79305 0.83307 1.20271 1.21437 1.18843 1.20365 0.84914 0.94550 1.05875 1.20437 0.93864 0.97985 1.02313 1.41609 1.05404 1.07959 1.58019 0.74943 0.88359 0.91957 0.91885 0.83647 0.95536 0.96063 0.92766 0.91317 0.88107 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.46 16 2 O -0.37 -5.08 10.58 -41.01 -0.43 -5.52 16 3 C 0.54 9.15 7.93 34.06 0.27 9.42 16 4 O -0.51 -9.74 16.68 -19.36 -0.32 -10.07 16 5 C -0.07 -1.33 7.10 -82.00 -0.58 -1.91 16 6 C -0.08 -1.61 10.60 -39.09 -0.41 -2.03 16 7 C -0.12 -2.63 5.30 -105.02 -0.56 -3.18 16 8 C 0.05 1.10 4.03 -29.04 -0.12 0.99 16 9 C -0.51 -14.23 9.65 -34.44 -0.33 -14.56 16 10 H 0.07 2.23 7.98 -52.48 -0.42 1.81 16 11 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 12 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 13 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 17 C 0.06 1.07 7.11 -82.20 -0.58 0.49 16 18 C -0.09 -1.31 10.08 36.01 0.36 -0.94 16 19 N -0.53 -8.37 6.07 -5.82 -0.04 -8.41 16 20 H 0.41 5.02 8.96 -40.82 -0.37 4.65 16 21 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.15 2.89 8.06 -52.48 -0.42 2.47 16 25 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 26 H 0.02 0.48 7.41 -51.93 -0.38 0.09 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.10 1.73 7.84 -51.93 -0.41 1.32 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 269.80 15.07 4.07 4.07 Total: -1.00 -32.75 269.80 -5.26 -38.01 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.65 Total: 0.63 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -0.98 Total: -8.45 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.74 Total: -35.23 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.76 Total: -15.58 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.75 -5.26 -38.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280486.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.903 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds