Wall clock time and date at job start Mon Mar 30 2020 03:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34888 * 116.99886 * 2 1 4 4 O 1.21621 * 120.00091 * 0.02562 * 3 2 1 5 5 C 1.46495 * 120.00064 * 179.97438 * 3 2 1 6 6 C 1.37987 * 126.26625 * 180.02562 * 5 3 2 7 7 C 1.39799 * 106.97300 * 180.02562 * 6 5 3 8 8 C 1.50697 * 126.08277 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47567 * 265.02930 * 8 7 6 10 10 H 1.08006 * 119.99889 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00084 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99961 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 120.00035 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47130 * 90.00085 * 13 11 9 15 15 H 1.48499 * 109.47088 * 210.00086 * 13 11 9 16 16 H 1.48498 * 109.47473 * 330.00236 * 13 11 9 17 17 C 1.35487 * 107.83801 * 359.97438 * 7 6 5 18 18 C 1.50703 * 125.50500 * 180.02562 * 17 7 6 19 19 N 1.34954 * 108.98611 * 0.26234 * 17 7 6 20 20 H 0.97008 * 125.63623 * 179.73435 * 19 17 7 21 21 H 1.09004 * 109.47249 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47048 * 300.00000 * 1 2 3 23 23 H 1.09004 * 109.47257 * 60.00362 * 1 2 3 24 24 H 1.08009 * 126.51783 * 0.03214 * 6 5 3 25 25 H 1.09001 * 109.46849 * 25.03139 * 8 7 6 26 26 H 1.09001 * 109.47287 * 145.02287 * 8 7 6 27 27 H 0.96998 * 119.99951 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.47152 * 89.99931 * 18 17 7 29 29 H 1.09001 * 109.46980 * 330.00031 * 18 17 7 30 30 H 1.09004 * 109.47113 * 210.00012 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2219 0.0005 5 6 3.5273 1.2786 0.0006 6 6 4.2842 2.4324 0.0011 7 6 5.6260 2.0402 0.0009 8 6 6.8196 2.9602 0.0008 9 6 7.2925 3.1695 -1.4146 10 1 6.7802 2.6844 -2.2324 11 6 8.3797 3.9794 -1.6655 12 7 8.7927 4.1617 -2.9008 13 14 9.2661 4.8178 -0.2511 14 1 10.3522 3.9350 0.2453 15 1 9.8473 6.1006 -0.7219 16 1 8.3037 5.0842 0.8480 17 6 5.6626 0.6858 0.0009 18 6 6.9126 -0.1560 0.0012 19 7 4.3988 0.2125 -0.0049 20 1 4.1460 -0.7241 -0.0098 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 3.9109 3.4459 0.0017 25 1 6.5389 3.9195 0.4358 26 1 7.6215 2.5151 0.5898 27 1 9.5579 4.7312 -3.0773 28 1 7.2136 -0.3590 1.0290 29 1 7.7112 0.3793 -0.5123 30 1 6.7170 -1.0971 -0.5128 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261280486.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:39 Heat of formation + Delta-G solvation = -74.791630 kcal Electronic energy + Delta-G solvation = -14728.315959 eV Core-core repulsion = 12102.293407 eV Total energy + Delta-G solvation = -2626.022553 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.45470 -40.95526 -37.51422 -35.44385 -33.41729 -32.55022 -29.82996 -29.24054 -27.16880 -24.64932 -23.30572 -21.33914 -20.10344 -19.23299 -18.86689 -17.97219 -17.47136 -16.31420 -16.20493 -15.54090 -14.94093 -14.64586 -14.43371 -14.28828 -14.05241 -13.73617 -13.26663 -13.15863 -13.02807 -12.66834 -12.22718 -12.17359 -11.87491 -11.81967 -11.81558 -11.50378 -10.69500 -9.71630 -8.90890 -8.20923 -6.24103 0.15927 1.42128 1.45462 1.57161 1.58197 1.69538 2.13928 2.23255 2.43391 3.13952 3.91842 4.08549 4.28627 4.31850 4.32019 4.35183 4.67503 4.70724 4.86940 4.93562 5.09580 5.17507 5.23638 5.31737 5.47555 5.65846 5.86400 6.06716 6.39978 6.58042 6.67802 6.82601 7.39100 8.95929 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.043867 B = 0.006445 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.143771 B = 4343.213533 C = 4606.472492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.545 3.455 4 O -0.536 6.536 5 C -0.073 4.073 6 C -0.108 4.108 7 C -0.169 4.169 8 C 0.055 3.945 9 C -0.510 4.510 10 H 0.025 0.975 11 C 0.006 3.994 12 N -0.954 5.954 13 Si 0.948 3.052 14 H -0.259 1.259 15 H -0.289 1.289 16 H -0.249 1.249 17 C 0.075 3.925 18 C -0.087 4.087 19 N -0.509 5.509 20 H 0.435 0.565 21 H 0.139 0.861 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.135 0.865 25 H 0.021 0.979 26 H 0.037 0.963 27 H 0.265 0.735 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.454 -12.343 9.386 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.393 3.607 4 O -0.427 6.427 5 C -0.183 4.183 6 C -0.135 4.135 7 C -0.174 4.174 8 C 0.017 3.983 9 C -0.548 4.548 10 H 0.044 0.956 11 C -0.190 4.190 12 N -0.595 5.595 13 Si 0.771 3.229 14 H -0.183 1.183 15 H -0.215 1.215 16 H -0.172 1.172 17 C -0.045 4.045 18 C -0.144 4.144 19 N -0.107 5.107 20 H 0.276 0.724 21 H 0.157 0.843 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.153 0.847 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.687 -12.159 9.286 18.663 hybrid contribution 0.061 0.561 -0.160 0.587 sum -10.626 -11.598 9.127 18.186 Atomic orbital electron populations 1.23618 0.73837 1.06064 1.02739 1.86541 1.25735 1.31173 1.84431 1.19726 0.86721 0.81905 0.72325 1.90859 1.66031 1.36994 1.48810 1.18996 0.86585 0.88542 1.24139 1.21334 0.92615 0.97088 1.02469 1.19589 0.94642 0.93848 1.09282 1.17994 0.91425 0.93736 0.95123 1.21238 1.12853 1.28159 0.92540 0.95619 1.25952 0.97874 0.96910 0.98257 1.70073 1.27399 1.40390 1.21654 0.85691 0.79351 0.78053 0.79796 1.18320 1.21496 1.17236 1.20653 0.86468 0.93836 1.03495 1.20520 0.91307 0.98330 1.04264 1.41504 1.04335 1.08662 1.56167 0.72445 0.84266 0.91651 0.92051 0.84713 0.96113 0.94488 0.92616 0.88373 0.90863 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.57 113.37 1.20 1.71 16 2 O -0.36 -9.04 10.58 -58.03 -0.61 -9.65 16 3 C 0.55 17.89 7.93 69.97 0.55 18.44 16 4 O -0.54 -20.36 16.68 19.44 0.32 -20.04 16 5 C -0.07 -2.55 7.10 40.32 0.29 -2.26 16 6 C -0.11 -4.44 10.60 22.59 0.24 -4.20 16 7 C -0.17 -7.14 5.30 -20.12 -0.11 -7.24 16 8 C 0.06 2.62 4.03 29.10 0.12 2.74 16 9 C -0.51 -29.47 9.65 25.60 0.25 -29.22 16 10 H 0.03 1.67 7.98 -2.91 -0.02 1.64 16 11 C 0.01 0.37 5.47 84.66 0.46 0.83 16 12 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 13 Si 0.95 43.78 27.47 68.60 1.88 45.66 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 16 H -0.25 -10.80 6.54 99.48 0.65 -10.14 16 17 C 0.08 2.56 7.11 41.44 0.29 2.85 16 18 C -0.09 -2.34 10.08 71.24 0.72 -1.62 16 19 N -0.51 -14.84 6.07 -172.33 -1.05 -15.89 16 20 H 0.43 9.02 8.96 -92.70 -0.83 8.18 16 21 H 0.14 1.26 8.14 -2.38 -0.02 1.24 16 22 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.13 5.64 8.06 -2.91 -0.02 5.62 16 25 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 26 H 0.04 1.63 7.41 -2.39 -0.02 1.61 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 2.44 7.84 -2.39 -0.02 2.42 16 30 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -73.32 269.80 5.12 -68.20 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.27 Total: 9.39 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 4.01 Total: -17.97 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -0.75 Total: -75.59 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.29 Total: -29.69 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Total: -73.32 5.12 -68.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280486.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.593 kcal (2) G-P(sol) polarization free energy of solvation -73.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds