Wall clock time and date at job start Mon Mar 30 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00206 * 2 1 4 4 H 1.48494 * 109.47382 * 270.00139 * 3 2 1 5 5 H 1.48495 * 109.46974 * 30.00398 * 3 2 1 6 6 H 1.48505 * 109.46815 * 150.00155 * 3 2 1 7 7 C 1.37881 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00067 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46871 * 300.00189 * 9 7 2 11 11 C 1.52997 * 109.47178 * 179.97438 * 9 7 2 12 12 H 1.09002 * 110.27643 * 300.70277 * 11 9 7 13 13 C 1.54598 * 110.39179 * 178.55288 * 11 9 7 14 14 C 1.54932 * 102.92273 * 219.08302 * 13 11 9 15 15 N 1.48539 * 103.22489 * 37.41993 * 14 13 11 16 16 C 1.47897 * 105.81843 * 320.78612 * 15 14 13 17 17 C 1.53006 * 109.47004 * 59.99984 * 9 7 2 18 18 F 1.39898 * 109.46918 * 180.02562 * 17 9 7 19 19 F 1.39898 * 109.46849 * 300.00088 * 17 9 7 20 20 F 1.39900 * 109.47388 * 59.99931 * 17 9 7 21 21 H 0.97000 * 119.99862 * 359.97438 * 1 2 3 22 22 H 1.08994 * 110.72376 * 337.44853 * 13 11 9 23 23 H 1.09002 * 110.71797 * 100.72760 * 13 11 9 24 24 H 1.08999 * 110.67033 * 278.98382 * 14 13 11 25 25 H 1.09005 * 110.81115 * 155.91631 * 14 13 11 26 26 H 1.00893 * 111.00160 * 81.30110 * 15 14 13 27 27 H 1.08997 * 109.92227 * 265.97847 * 16 15 14 28 28 H 1.08999 * 109.91658 * 144.68234 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 2.2451 -3.6621 -0.0018 12 1 2.8867 -3.6096 -0.8814 13 6 1.4941 -5.0129 0.0347 14 6 2.3691 -5.8703 0.9833 15 7 2.8118 -4.8945 2.0120 16 6 3.0954 -3.6399 1.2820 17 6 0.3708 -2.5799 -1.2495 18 9 -0.3291 -3.7912 -1.2492 19 9 -0.5382 -1.5165 -1.2489 20 9 1.1746 -2.5056 -2.3921 21 1 -0.4850 0.8401 0.0004 22 1 0.4919 -4.8860 0.4438 23 1 1.4526 -5.4581 -0.9594 24 1 3.2257 -6.2819 0.4496 25 1 1.7810 -6.6678 1.4375 26 1 2.0957 -4.7535 2.7086 27 1 4.1536 -3.5904 1.0257 28 1 2.8188 -2.7826 1.8956 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261296504.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:58 Heat of formation + Delta-G solvation = -144.824756 kcal Electronic energy + Delta-G solvation = -16681.016552 eV Core-core repulsion = 13510.100395 eV Total energy + Delta-G solvation = -3170.916157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.42793 -46.07498 -45.59442 -38.18675 -33.70508 -31.16856 -28.72358 -26.73280 -24.52450 -21.64590 -21.15529 -19.24384 -17.21228 -16.70012 -16.54253 -15.92438 -15.32915 -14.65000 -14.29135 -13.51879 -13.09396 -12.91133 -12.50717 -12.41553 -12.11556 -11.97834 -11.81937 -11.80003 -11.46207 -10.94261 -10.84060 -10.76649 -10.57652 -10.20915 -9.97004 -9.43555 -9.25827 -8.57136 -8.18695 -6.13263 -4.32708 3.22978 3.29876 3.32398 4.26999 4.53103 4.73953 5.00768 5.28826 5.33699 5.58637 5.81205 5.90893 5.92015 6.07724 6.14975 6.21394 6.34262 6.49847 6.62517 6.73860 6.91148 7.12807 7.34613 7.70583 7.76545 7.93210 8.66562 9.33214 10.79032 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.029774 B = 0.013262 C = 0.010276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.201557 B = 2110.798649 C = 2724.110790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.059 3.941 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.531 4.531 8 H 0.071 0.929 9 C 0.025 3.975 10 H 0.059 0.941 11 C -0.108 4.108 12 H 0.073 0.927 13 C -0.157 4.157 14 C 0.040 3.960 15 N -0.681 5.681 16 C 0.057 3.943 17 C 0.428 3.572 18 F -0.229 7.229 19 F -0.141 7.141 20 F -0.209 7.209 21 H 0.263 0.737 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.333 0.667 27 H 0.067 0.933 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 -6.137 0.832 6.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.147 4.147 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.090 0.910 9 C 0.005 3.995 10 H 0.077 0.923 11 C -0.128 4.128 12 H 0.091 0.909 13 C -0.196 4.196 14 C -0.089 4.089 15 N -0.308 5.308 16 C -0.073 4.073 17 C 0.373 3.627 18 F -0.211 7.211 19 F -0.122 7.122 20 F -0.191 7.191 21 H 0.074 0.926 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.148 0.852 27 H 0.086 0.914 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.249 -6.234 0.898 6.688 hybrid contribution -0.768 1.246 -0.706 1.625 sum 1.481 -4.988 0.192 5.206 Atomic orbital electron populations 1.70387 1.05837 1.26751 1.45234 1.25159 0.95068 1.00059 0.94441 0.86381 0.79759 0.82374 0.78357 1.20425 1.21039 1.19505 1.20841 0.93517 0.88514 1.53941 0.91046 1.19938 0.93223 0.95561 0.90794 0.92270 1.22371 0.97414 0.93559 0.99452 0.90876 1.23388 0.99660 0.96214 1.00353 1.23095 0.97679 0.95165 0.92998 1.62810 1.45161 1.09168 1.13624 1.22686 0.99087 0.91665 0.93834 1.22852 0.80465 0.72122 0.87211 1.92991 1.81922 1.49185 1.97020 1.93407 1.68672 1.53813 1.96287 1.92984 1.74455 1.96158 1.55509 0.92626 0.90925 0.91557 0.90931 0.91585 0.85250 0.91440 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.40 9.50 55.43 0.53 -22.88 15 2 C 0.06 1.57 5.20 -17.82 -0.09 1.47 15 3 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.53 -13.64 7.41 -34.44 -0.26 -13.89 15 8 H 0.07 1.80 7.56 -52.49 -0.40 1.40 15 9 C 0.02 0.58 1.33 -91.77 -0.12 0.46 15 10 H 0.06 1.48 8.14 -51.93 -0.42 1.06 15 11 C -0.11 -2.14 2.37 -89.26 -0.21 -2.35 15 12 H 0.07 1.51 7.86 -51.93 -0.41 1.10 15 13 C -0.16 -2.73 4.90 -24.87 -0.12 -2.85 15 14 C 0.04 0.60 7.55 -1.90 -0.01 0.59 15 15 N -0.68 -10.91 7.51 -110.08 -0.83 -11.74 15 16 C 0.06 1.02 6.67 -2.75 -0.02 1.01 15 17 C 0.43 10.58 2.66 37.16 0.10 10.68 15 18 F -0.23 -5.19 14.24 2.25 0.03 -5.16 15 19 F -0.14 -3.86 12.91 2.25 0.03 -3.83 15 20 F -0.21 -5.21 16.54 2.25 0.04 -5.17 15 21 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 22 H 0.07 1.32 6.85 -51.93 -0.36 0.97 15 23 H 0.07 1.13 7.99 -51.93 -0.41 0.72 15 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 26 H 0.33 4.98 8.92 -39.30 -0.35 4.63 15 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 28 H 0.08 1.59 7.20 -51.93 -0.37 1.22 15 LS Contribution 236.91 15.07 3.57 3.57 Total: -1.00 -27.10 236.91 -5.52 -32.62 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -3.13 Total: 1.90 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.74 Total: -4.88 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.30 Total: -34.61 kcal Atomic # 9 Polarization: -14.26 SS G_CDS: 0.10 Total: -14.16 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -27.10 -5.52 -32.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261296504.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.205 kcal (2) G-P(sol) polarization free energy of solvation -27.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds