Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.34925 * 116.99963 * 2 1 4 4 O 1.21650 * 119.99564 * 359.97438 * 3 2 1 5 5 C 1.46276 * 120.00206 * 180.02562 * 3 2 1 6 6 C 1.38125 * 126.26668 * 180.02562 * 5 3 2 7 7 C 1.50697 * 126.42475 * 359.71711 * 6 5 3 8 8 C 1.39995 * 107.15500 * 179.73578 * 6 5 3 9 9 C 1.35451 * 107.97393 * 359.97438 * 8 6 5 10 10 C 1.50704 * 125.55925 * 179.97438 * 9 8 6 11 11 N 1.36071 * 108.87571 * 0.02562 * 9 8 6 12 12 C 1.37131 * 125.73384 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99479 * 222.12016 * 12 11 9 14 14 C 1.39101 * 120.00050 * 42.12072 * 12 11 9 15 15 N 1.31244 * 120.00413 * 18.62350 * 14 12 11 16 16 Si 1.86803 * 120.00124 * 198.62254 * 14 12 11 17 17 H 1.48503 * 109.46982 * 59.99914 * 16 14 12 18 18 H 1.48501 * 109.47430 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47193 * 300.00165 * 16 14 12 20 20 H 1.08994 * 109.47159 * 299.99917 * 1 2 3 21 21 H 1.08994 * 109.47130 * 60.00445 * 1 2 3 22 22 H 1.09006 * 109.46812 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47520 * 89.99947 * 7 6 5 24 24 H 1.09009 * 109.47273 * 209.99780 * 7 6 5 25 25 H 1.09001 * 109.47056 * 329.99813 * 7 6 5 26 26 H 1.07998 * 126.00959 * 180.02562 * 8 6 5 27 27 H 1.09000 * 109.46497 * 87.68642 * 10 9 8 28 28 H 1.08994 * 109.46731 * 207.68241 * 10 9 8 29 29 H 1.08998 * 109.47418 * 327.68518 * 10 9 8 30 30 H 0.96993 * 120.00458 * 174.92128 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0415 1.2022 0.0000 4 8 1.3789 2.2224 -0.0005 5 6 3.5023 1.2788 -0.0006 6 6 4.2599 2.4337 -0.0001 7 6 3.7368 3.8470 -0.0050 8 6 5.6049 2.0453 0.0052 9 6 5.6489 0.6915 0.0085 10 6 6.9028 -0.1445 0.0140 11 7 4.3764 0.2096 0.0048 12 6 4.0216 -1.1150 0.0070 13 1 3.2143 -1.4587 -0.6225 14 6 4.7016 -2.0158 0.8201 15 7 5.4120 -1.5785 1.8333 16 14 4.6038 -3.8481 0.4699 17 1 5.1342 -4.1212 -0.8900 18 1 5.4110 -4.5877 1.4732 19 1 3.1888 -4.2920 0.5477 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.6069 4.1899 1.0215 24 1 4.4473 4.4957 -0.5175 25 1 2.7780 3.8777 -0.5225 26 1 6.4573 2.7084 0.0073 27 1 7.2251 -0.3091 1.0422 28 1 6.7015 -1.1043 -0.4617 29 1 7.6885 0.3752 -0.5343 30 1 5.8257 -2.2087 2.4436 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301019.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = -70.546417 kcal Electronic energy + Delta-G solvation = -15646.825032 eV Core-core repulsion = 13020.986566 eV Total energy + Delta-G solvation = -2625.838466 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.03879 -40.70064 -37.41226 -35.62639 -33.03864 -32.44726 -29.17645 -28.90346 -27.04901 -25.81491 -22.74536 -21.51014 -20.02979 -19.40942 -17.91174 -17.51645 -17.24525 -16.57367 -15.70277 -15.42317 -14.68940 -14.26002 -14.06528 -13.86960 -13.74447 -13.49946 -13.39090 -13.18262 -12.87663 -12.76639 -12.69442 -12.27226 -12.06034 -12.04895 -11.62315 -11.27398 -10.89203 -9.36709 -8.64584 -8.54647 -6.45721 0.59333 1.38324 1.43130 1.51571 2.06083 2.09725 2.20724 2.41864 2.87247 3.05511 4.33154 4.33306 4.35257 4.45815 4.56308 4.66797 4.74910 4.86188 4.98466 5.05693 5.06576 5.21179 5.25324 5.41501 5.43577 5.54032 5.77206 6.03415 6.43112 6.55479 6.87877 7.15660 7.55679 8.39657 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.023849 B = 0.013668 C = 0.009125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.774583 B = 2048.084217 C = 3067.622264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.540 3.460 4 O -0.550 6.550 5 C -0.153 4.153 6 C -0.123 4.123 7 C -0.067 4.067 8 C -0.246 4.246 9 C 0.024 3.976 10 C -0.049 4.049 11 N -0.223 5.223 12 C -0.376 4.376 13 H 0.106 0.894 14 C 0.028 3.972 15 N -0.849 5.849 16 Si 0.996 3.004 17 H -0.257 1.257 18 H -0.268 1.268 19 H -0.262 1.262 20 H 0.054 0.946 21 H 0.060 0.940 22 H 0.126 0.874 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.149 0.851 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 -1.136 -2.492 2.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C 0.392 3.608 4 O -0.444 6.444 5 C -0.264 4.264 6 C -0.132 4.132 7 C -0.124 4.124 8 C -0.268 4.268 9 C -0.101 4.101 10 C -0.106 4.106 11 N 0.118 4.882 12 C -0.504 4.504 13 H 0.124 0.876 14 C -0.183 4.183 15 N -0.478 5.478 16 Si 0.816 3.184 17 H -0.182 1.182 18 H -0.192 1.192 19 H -0.186 1.186 20 H 0.073 0.927 21 H 0.079 0.921 22 H 0.144 0.856 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.167 0.833 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.231 -1.280 -2.336 2.934 hybrid contribution -0.448 -0.665 0.248 0.839 sum -1.678 -1.945 -2.089 3.311 Atomic orbital electron populations 1.23098 0.76512 1.05033 1.01990 1.86414 1.24001 1.32360 1.84248 1.19957 0.87511 0.81215 0.72138 1.90696 1.66352 1.36096 1.51295 1.19591 0.87005 0.89530 1.30293 1.19955 0.92818 0.93749 1.06636 1.20123 1.00487 0.90499 1.01268 1.20440 0.95817 0.93349 1.17224 1.20874 0.86698 0.93781 1.08769 1.20092 0.91578 0.97266 1.01685 1.40264 1.04069 1.04577 1.39255 1.20119 1.21442 0.80784 1.28021 0.87609 1.26480 0.93515 1.05620 0.92694 1.69982 1.28259 1.38767 1.10813 0.84977 0.79490 0.74724 0.79239 1.18163 1.19217 1.18650 0.92702 0.92135 0.85589 0.92460 0.90339 0.92565 0.83298 0.91664 0.93651 0.90255 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.45 113.37 1.18 2.09 16 2 O -0.35 -16.18 8.43 -58.40 -0.49 -16.68 16 3 C 0.54 27.10 7.89 69.91 0.55 27.66 16 4 O -0.55 -27.27 14.58 19.34 0.28 -26.99 16 5 C -0.15 -8.11 6.85 40.22 0.28 -7.83 16 6 C -0.12 -5.89 6.22 -19.47 -0.12 -6.01 16 7 C -0.07 -2.64 9.82 71.23 0.70 -1.94 16 8 C -0.25 -11.31 10.65 22.05 0.23 -11.07 16 9 C 0.02 1.21 6.28 41.26 0.26 1.46 16 10 C -0.05 -2.09 8.56 71.24 0.61 -1.48 16 11 N -0.22 -11.97 2.77 -324.84 -0.90 -12.86 16 12 C -0.38 -19.77 8.47 84.07 0.71 -19.05 16 13 H 0.11 5.53 7.04 -2.91 -0.02 5.51 16 14 C 0.03 1.33 3.99 84.99 0.34 1.67 16 15 N -0.85 -42.89 10.88 21.68 0.24 -42.65 16 16 Si 1.00 37.30 29.60 68.60 2.03 39.33 16 17 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 18 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 19 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 20 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 21 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 22 H 0.13 3.22 8.14 -2.38 -0.02 3.20 16 23 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 25 H 0.06 2.32 6.50 -2.39 -0.02 2.31 16 26 H 0.15 5.75 8.06 -2.91 -0.02 5.73 16 27 H 0.06 2.87 7.17 -2.39 -0.02 2.85 16 28 H 0.04 1.98 6.97 -2.39 -0.02 1.96 16 29 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.29 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -62.53 259.62 7.04 -55.49 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 1.14 Total: 18.86 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.75 Total: -14.51 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.66 Total: -55.51 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.21 Total: -43.66 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Total: -62.53 7.04 -55.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301019.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.056 kcal (2) G-P(sol) polarization free energy of solvation -62.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds