Wall clock time and date at job start Mon Mar 30 2020 03:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99785 * 2 1 3 5 5 H 1.08003 * 119.99963 * 239.99738 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47092 * 90.00048 * 8 6 4 10 10 H 1.48498 * 109.47340 * 210.00299 * 8 6 4 11 11 H 1.48501 * 109.47391 * 330.00372 * 8 6 4 12 12 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 13 13 N 1.46500 * 109.46998 * 299.99786 * 12 2 1 14 14 C 1.34522 * 125.20772 * 269.69823 * 13 12 2 15 15 O 1.21407 * 125.79234 * 359.97438 * 14 13 12 16 16 C 1.47967 * 108.41271 * 179.85176 * 14 13 12 17 17 C 1.34318 * 106.79067 * 0.40570 * 16 14 13 18 18 C 1.34514 * 125.20825 * 89.99786 * 13 12 2 19 19 O 1.21400 * 125.79297 * 359.97438 * 18 13 12 20 20 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 21 21 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 22 22 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 25 25 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 26 26 H 0.96992 * 120.00038 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.46955 * 60.00011 * 12 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 29 29 H 1.07996 * 126.59950 * 180.13364 * 16 14 13 30 30 H 1.08004 * 126.59871 * 179.80319 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7120 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 2.1934 0.9656 3.0820 15 8 3.2654 1.4377 2.7630 16 6 1.3694 1.3905 4.2352 17 6 0.2727 0.6150 4.2352 18 6 0.3958 -0.2996 3.0787 19 8 -0.4100 -1.1482 2.7557 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6768 1.9563 -0.8901 25 1 1.6767 1.9563 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 1.6767 -1.7489 1.2492 28 1 3.1300 -0.7217 1.2490 29 1 1.6064 2.1707 4.9434 30 1 -0.5424 0.6524 4.9428 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306307209.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:44 Heat of formation + Delta-G solvation = -25.315877 kcal Electronic energy + Delta-G solvation = -15776.784244 eV Core-core repulsion = 13152.907121 eV Total energy + Delta-G solvation = -2623.877123 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.84045 -38.17219 -36.13422 -35.61013 -32.72695 -30.66226 -25.97279 -25.71657 -25.02449 -24.91450 -21.14751 -20.29352 -18.49565 -16.78119 -16.50652 -15.73590 -15.72615 -14.71022 -14.46085 -13.85659 -13.67967 -13.61399 -13.05873 -12.69665 -12.21072 -11.29474 -11.17508 -10.79537 -10.72057 -10.50400 -10.33412 -10.22287 -10.10588 -10.02902 -9.78327 -9.48852 -8.80228 -8.67856 -8.34989 -5.98648 -4.10259 0.31330 2.82780 2.91329 3.27773 3.29747 3.36542 3.39756 4.04801 4.39841 4.44617 5.27412 5.33500 5.38798 5.73708 5.89995 6.05624 6.24735 6.42035 6.82423 6.89807 7.01408 7.08065 7.25998 7.44228 7.58660 7.64136 7.71698 8.01282 8.07719 8.20566 8.40728 8.89285 9.55037 11.02541 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.044282 B = 0.008909 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.161593 B = 3141.972223 C = 3381.242918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.053 3.947 3 C -0.124 4.124 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.124 3.876 13 N -0.574 5.574 14 C 0.537 3.463 15 O -0.458 6.458 16 C -0.148 4.148 17 C -0.148 4.148 18 C 0.537 3.463 19 O -0.458 6.458 20 H 0.000 1.000 21 H 0.083 0.917 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.083 0.917 25 H 0.000 1.000 26 H 0.260 0.740 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.176 0.824 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.708 1.002 12.028 12.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.052 3.948 3 C -0.181 4.181 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.005 3.995 13 N -0.315 5.315 14 C 0.325 3.675 15 O -0.329 6.329 16 C -0.170 4.170 17 C -0.170 4.170 18 C 0.325 3.675 19 O -0.329 6.329 20 H 0.019 0.981 21 H 0.101 0.899 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.101 0.899 25 H 0.019 0.981 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.193 0.807 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.594 0.852 11.429 11.476 hybrid contribution 0.240 -0.357 -0.826 0.932 sum -0.354 0.495 10.602 10.620 Atomic orbital electron populations 1.21778 0.97345 0.99287 0.99709 1.18485 0.93148 0.93025 0.90136 1.21775 0.98657 0.97981 0.99711 1.20917 1.31739 1.12114 0.89847 0.92452 1.24886 0.94833 0.94885 0.98871 1.69828 1.36506 1.22629 1.23217 0.86552 0.79233 0.79359 0.82591 1.20694 1.21236 1.19910 1.22237 0.99283 0.95965 0.82000 1.46870 1.21231 1.34947 1.28475 1.19290 0.85409 0.79344 0.83449 1.90773 1.19742 1.54514 1.67890 1.24669 0.94854 0.99787 0.97700 1.24670 0.99410 0.95278 0.97663 1.19281 0.81146 0.83568 0.83492 1.90772 1.42387 1.31883 1.67860 0.98105 0.89864 0.95138 0.95137 0.89857 0.98104 0.92979 0.90139 0.90120 0.80688 0.80687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 7.28 37.16 0.27 -2.81 16 2 C 0.05 1.31 0.57 -155.66 -0.09 1.22 16 3 C -0.12 -3.08 7.30 37.16 0.27 -2.81 16 4 C -0.51 -13.62 8.01 -34.44 -0.28 -13.90 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -24.56 9.35 55.43 0.52 -24.04 16 8 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.12 2.63 4.76 -4.04 -0.02 2.61 16 13 N -0.57 -10.64 2.14 -117.53 -0.25 -10.89 16 14 C 0.54 9.11 6.44 -12.39 -0.08 9.03 16 15 O -0.46 -9.05 16.87 5.45 0.09 -8.96 16 16 C -0.15 -1.69 11.15 -36.98 -0.41 -2.10 16 17 C -0.15 -1.69 11.15 -36.98 -0.41 -2.10 16 18 C 0.54 9.12 6.44 -12.39 -0.08 9.04 16 19 O -0.46 -9.05 16.83 5.45 0.09 -8.96 16 20 H 0.00 0.00 6.20 -51.93 -0.32 -0.32 16 21 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 25 H 0.00 0.00 6.22 -51.93 -0.32 -0.32 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.08 1.69 8.02 -51.93 -0.42 1.28 16 28 H 0.08 1.70 8.01 -51.93 -0.42 1.28 16 29 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 253.34 15.07 3.82 3.82 Total: -1.00 -30.66 253.34 -5.01 -35.67 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -3.34 Total: -2.63 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.92 Total: -0.10 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.27 Total: -34.93 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.18 Total: -17.92 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.66 -5.01 -35.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306307209.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.355 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds