Wall clock time and date at job start Mon Mar 30 2020 03:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99785 * 2 1 3 5 5 H 1.08003 * 119.99963 * 239.99738 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47092 * 90.00048 * 8 6 4 10 10 H 1.48498 * 109.47340 * 210.00299 * 8 6 4 11 11 H 1.48501 * 109.47391 * 330.00372 * 8 6 4 12 12 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 13 13 N 1.46500 * 109.46998 * 299.99786 * 12 2 1 14 14 C 1.34522 * 125.20772 * 269.69823 * 13 12 2 15 15 O 1.21407 * 125.79234 * 359.97438 * 14 13 12 16 16 C 1.47967 * 108.41271 * 179.85176 * 14 13 12 17 17 C 1.34318 * 106.79067 * 0.40570 * 16 14 13 18 18 C 1.34514 * 125.20825 * 89.99786 * 13 12 2 19 19 O 1.21400 * 125.79297 * 359.97438 * 18 13 12 20 20 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 21 21 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 22 22 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 25 25 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 26 26 H 0.96992 * 120.00038 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.46955 * 60.00011 * 12 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 29 29 H 1.07996 * 126.59950 * 180.13364 * 16 14 13 30 30 H 1.08004 * 126.59871 * 179.80319 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7120 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 2.1934 0.9656 3.0820 15 8 3.2654 1.4377 2.7630 16 6 1.3694 1.3905 4.2352 17 6 0.2727 0.6150 4.2352 18 6 0.3958 -0.2996 3.0787 19 8 -0.4100 -1.1482 2.7557 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6768 1.9563 -0.8901 25 1 1.6767 1.9563 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 1.6767 -1.7489 1.2492 28 1 3.1300 -0.7217 1.2490 29 1 1.6064 2.1707 4.9434 30 1 -0.5424 0.6524 4.9428 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306307209.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:43 Heat of formation + Delta-G solvation = -45.204231 kcal Electronic energy + Delta-G solvation = -15777.646668 eV Core-core repulsion = 13152.907121 eV Total energy + Delta-G solvation = -2624.739547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.17283 -39.57950 -37.98014 -37.01135 -34.35579 -32.41989 -27.74405 -27.74193 -27.01100 -26.16428 -22.33573 -21.87273 -20.16353 -18.34998 -18.05437 -17.56366 -17.03050 -16.54464 -15.98453 -15.09089 -15.01125 -14.84728 -14.78539 -14.52158 -14.17592 -13.29673 -13.12913 -12.70586 -12.63322 -12.32641 -12.23793 -12.00884 -11.77189 -11.51333 -11.15860 -11.05495 -10.81655 -10.43715 -10.37567 -8.05997 -6.24269 -0.79482 1.41345 1.42130 1.50962 1.58458 1.72541 1.93995 2.42883 3.04851 3.17147 3.30082 4.15564 4.37027 4.43579 4.50408 4.55842 4.68003 4.88454 4.89873 4.94569 5.05083 5.05417 5.38828 5.52841 5.60007 5.82046 6.02089 6.07649 6.31878 6.32975 6.68854 6.82385 7.43668 8.93633 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.044282 B = 0.008909 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.161593 B = 3141.972223 C = 3381.242918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.045 3.955 3 C -0.105 4.105 4 C -0.528 4.528 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.905 5.905 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.133 3.867 13 N -0.591 5.591 14 C 0.523 3.477 15 O -0.494 6.494 16 C -0.122 4.122 17 C -0.122 4.122 18 C 0.523 3.477 19 O -0.494 6.494 20 H 0.012 0.988 21 H 0.058 0.942 22 H 0.018 0.982 23 H 0.018 0.982 24 H 0.058 0.942 25 H 0.012 0.988 26 H 0.260 0.740 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.227 0.773 30 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 1.498 13.842 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.044 3.956 3 C -0.163 4.163 4 C -0.567 4.567 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.013 3.987 13 N -0.332 5.332 14 C 0.314 3.686 15 O -0.368 6.368 16 C -0.143 4.143 17 C -0.143 4.143 18 C 0.314 3.686 19 O -0.367 6.367 20 H 0.031 0.969 21 H 0.077 0.923 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.243 0.757 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -0.946 1.355 13.272 13.375 hybrid contribution 0.361 -0.532 -1.400 1.540 sum -0.586 0.823 11.872 11.915 Atomic orbital electron populations 1.21548 0.97601 0.98179 0.98953 1.18505 0.92853 0.92975 0.91271 1.21546 0.97634 0.98153 0.98957 1.21251 1.31936 1.12358 0.91120 0.92668 1.25603 0.95052 0.95574 1.01512 1.69952 1.37138 1.23546 1.23705 0.85619 0.78804 0.78317 0.79257 1.20339 1.20942 1.19431 1.21767 0.98908 0.95676 0.82370 1.46996 1.22514 1.35700 1.28030 1.20340 0.85324 0.78314 0.84598 1.90756 1.21437 1.55398 1.69167 1.24879 0.92886 1.00737 0.95791 1.24880 1.00877 0.92798 0.95743 1.20332 0.79846 0.83740 0.84656 1.90755 1.43246 1.33606 1.69137 0.96879 0.92332 0.96299 0.96286 0.92324 0.96876 0.93019 0.90587 0.90590 0.75654 0.75653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.31 7.28 71.98 0.52 -4.79 16 2 C 0.04 2.25 0.57 -52.93 -0.03 2.22 16 3 C -0.11 -5.32 7.30 71.98 0.53 -4.79 16 4 C -0.53 -28.85 8.01 25.60 0.21 -28.64 16 5 H 0.06 2.96 7.74 -2.91 -0.02 2.93 16 6 C 0.02 1.21 5.15 84.65 0.44 1.64 16 7 N -0.90 -51.12 9.35 21.45 0.20 -50.92 16 8 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 C 0.13 5.75 4.76 86.38 0.41 6.16 16 13 N -0.59 -21.41 2.14 -762.71 -1.63 -23.04 16 14 C 0.52 16.79 6.44 86.86 0.56 17.35 16 15 O -0.49 -19.14 16.87 -3.42 -0.06 -19.19 16 16 C -0.12 -2.20 11.15 23.96 0.27 -1.94 16 17 C -0.12 -2.20 11.15 23.95 0.27 -1.94 16 18 C 0.52 16.80 6.44 86.86 0.56 17.36 16 19 O -0.49 -19.14 16.83 -3.40 -0.06 -19.19 16 20 H 0.01 0.58 6.20 -2.39 -0.01 0.57 16 21 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 22 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 25 H 0.01 0.58 6.22 -2.39 -0.01 0.57 16 26 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 27 H 0.08 3.28 8.02 -2.39 -0.02 3.26 16 28 H 0.08 3.28 8.01 -2.39 -0.02 3.26 16 29 H 0.23 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.23 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -68.76 253.34 5.35 -63.41 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 1.15 Total: 0.63 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 3.73 Total: 2.64 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -1.43 Total: -73.95 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.12 Total: -38.39 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -68.76 5.35 -63.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306307209.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.203 kcal (2) G-P(sol) polarization free energy of solvation -68.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds