Wall clock time and date at job start Mon Mar 30 2020 02:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76199 * 103.00071 * 2 1 4 4 C 1.38857 * 120.04093 * 0.02562 * 3 2 1 5 5 C 1.38729 * 119.84587 * 179.97438 * 4 3 2 6 6 N 1.39668 * 120.03592 * 179.97438 * 5 4 3 7 7 C 1.39010 * 119.93310 * 0.02562 * 5 4 3 8 8 C 1.38152 * 120.08099 * 359.97438 * 7 5 4 9 9 C 1.50704 * 119.92122 * 179.97438 * 8 7 5 10 10 C 1.50705 * 109.46814 * 90.00614 * 9 8 7 11 11 H 1.07995 * 119.99907 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99866 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99897 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99718 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47337 * 59.99965 * 14 12 10 16 16 H 1.48507 * 109.46770 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47032 * 299.99741 * 14 12 10 18 18 C 1.38147 * 120.15619 * 359.75078 * 8 7 5 19 19 H 1.09000 * 109.46946 * 60.00083 * 1 2 3 20 20 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47085 * 299.99567 * 1 2 3 22 22 H 1.07998 * 120.08065 * 359.95698 * 4 3 2 23 23 H 0.96995 * 120.00013 * 0.02562 * 6 5 4 24 24 H 0.97006 * 120.00284 * 179.97438 * 6 5 4 25 25 H 1.07997 * 119.96349 * 179.97438 * 7 5 4 26 26 H 1.08997 * 109.47330 * 210.00362 * 9 8 7 27 27 H 1.08996 * 109.47470 * 330.00726 * 9 8 7 28 28 H 0.97006 * 119.99790 * 179.97438 * 13 12 10 29 29 H 1.08009 * 119.96841 * 180.25296 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1955 2.6646 0.0005 5 6 1.5122 4.0152 0.0011 6 7 0.4946 4.9719 0.0011 7 6 2.8434 4.4155 0.0005 8 6 3.8508 3.4702 0.0000 9 6 5.2928 3.9082 -0.0012 10 6 5.7745 4.0543 1.4193 11 1 5.1034 3.8508 2.2407 12 6 7.0716 4.4489 1.6703 13 7 7.8885 4.6972 0.6700 14 14 7.6684 4.6307 3.4310 15 1 7.5480 3.3270 4.1316 16 1 9.0890 5.0635 3.4299 17 1 6.8424 5.6471 4.1311 18 6 3.5394 2.1242 0.0052 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.1621 2.3510 0.0003 23 1 -0.4341 4.6920 0.0011 24 1 0.7166 5.9162 0.0018 25 1 3.0905 5.4669 0.0005 26 1 5.8987 3.1622 -0.5153 27 1 5.3814 4.8653 -0.5151 28 1 8.8010 4.9751 0.8466 29 1 4.3295 1.3877 0.0089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306583300.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:23 Heat of formation + Delta-G solvation = 8.863067 kcal Electronic energy + Delta-G solvation = -12541.088685 eV Core-core repulsion = 10361.446544 eV Total energy + Delta-G solvation = -2179.642142 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.75809 -34.52161 -33.03942 -31.28938 -29.04618 -28.29373 -26.76946 -23.33374 -22.01867 -20.34217 -16.98417 -16.43969 -16.21013 -15.75024 -14.97004 -14.45653 -13.85019 -13.74198 -13.71057 -12.83723 -12.76661 -12.26433 -11.98597 -11.36289 -11.15917 -10.96479 -10.52579 -10.48024 -10.46150 -9.99935 -9.61971 -9.44815 -8.41666 -8.38937 -7.36114 -6.82269 -6.01308 -4.04611 1.81898 1.91471 2.25810 2.69410 3.34926 3.38541 3.42374 4.20797 4.39006 4.56462 5.07919 5.08757 5.33686 5.40160 5.64576 5.84721 5.90268 6.22964 6.27803 6.55452 6.77532 6.98956 7.20384 7.39960 7.57906 7.84514 7.94301 7.95678 8.05314 8.34775 9.00201 9.58737 11.08794 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.030612 B = 0.007195 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.454270 B = 3890.816304 C = 4365.890410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.133 6.133 3 C -0.041 4.041 4 C -0.235 4.235 5 C 0.223 3.777 6 N -0.884 5.884 7 C -0.197 4.197 8 C 0.026 3.974 9 C 0.047 3.953 10 C -0.510 4.510 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.151 4.151 19 H 0.079 0.921 20 H 0.100 0.900 21 H 0.079 0.921 22 H 0.110 0.890 23 H 0.390 0.610 24 H 0.396 0.604 25 H 0.119 0.881 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.856 -4.013 -1.907 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.108 5.892 3 C -0.154 4.154 4 C -0.263 4.263 5 C 0.119 3.881 6 N -0.424 5.424 7 C -0.221 4.221 8 C 0.023 3.977 9 C 0.010 3.990 10 C -0.548 4.548 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.723 3.277 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.176 4.176 19 H 0.098 0.902 20 H 0.119 0.881 21 H 0.098 0.902 22 H 0.128 0.872 23 H 0.217 0.783 24 H 0.224 0.776 25 H 0.137 0.863 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.991 -5.060 -1.950 15.005 hybrid contribution -0.776 1.538 1.008 1.996 sum -14.767 -3.522 -0.942 15.211 Atomic orbital electron populations 1.23565 0.95959 1.06193 1.05255 1.85368 1.05163 1.05332 1.93335 1.21250 0.96491 0.94471 1.03208 1.20190 0.97387 0.91320 1.17441 1.17575 0.88664 0.88353 0.93543 1.42359 1.06281 1.07197 1.86577 1.20577 0.90040 0.99943 1.11553 1.20357 0.97906 0.91387 0.88066 1.18390 0.85421 0.97288 0.97865 1.20999 0.96488 1.45963 0.91376 0.92448 1.24999 0.96712 0.95355 0.97226 1.69950 1.06295 1.46408 1.30712 0.86592 0.77584 0.78656 0.84827 1.20092 1.21258 1.20232 1.20488 0.93173 0.96237 1.07661 0.90191 0.88095 0.90165 0.87177 0.78285 0.77625 0.86346 0.95038 0.95157 0.92804 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.15 101.05 0.92 -0.58 15 2 S -0.13 -2.03 22.56 -107.50 -2.43 -4.45 15 3 C -0.04 -0.76 6.11 -39.07 -0.24 -1.00 15 4 C -0.24 -3.92 9.21 -39.17 -0.36 -4.28 15 5 C 0.22 3.79 6.75 -83.82 -0.57 3.23 15 6 N -0.88 -11.11 9.09 32.39 0.29 -10.81 15 7 C -0.20 -3.93 9.54 -39.33 -0.38 -4.31 15 8 C 0.03 0.58 5.06 -104.68 -0.53 0.05 15 9 C 0.05 1.24 5.10 -29.03 -0.15 1.09 15 10 C -0.51 -14.48 9.09 -34.44 -0.31 -14.79 15 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 15 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 13 N -0.89 -26.60 13.29 55.43 0.74 -25.86 15 14 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 15 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 16 H -0.29 -6.87 7.11 56.52 0.40 -6.46 15 17 H -0.28 -6.62 7.11 56.52 0.40 -6.21 15 18 C -0.15 -3.18 9.44 -39.33 -0.37 -3.55 15 19 H 0.08 0.80 7.75 -51.92 -0.40 0.39 15 20 H 0.10 0.85 8.14 -51.92 -0.42 0.43 15 21 H 0.08 0.82 7.75 -51.92 -0.40 0.42 15 22 H 0.11 1.52 5.88 -52.49 -0.31 1.21 15 23 H 0.39 3.89 8.84 -40.82 -0.36 3.53 15 24 H 0.40 4.39 8.84 -40.82 -0.36 4.02 15 25 H 0.12 2.29 8.06 -52.49 -0.42 1.87 15 26 H 0.03 0.86 8.08 -51.93 -0.42 0.44 15 27 H 0.03 0.82 8.08 -51.93 -0.42 0.40 15 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 29 H 0.12 2.58 8.06 -52.48 -0.42 2.15 15 LS Contribution 266.23 15.07 4.01 4.01 Total: -1.00 -30.74 266.23 -7.96 -38.70 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.48 Total: 4.22 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -2.08 Total: -22.57 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 1.03 Total: -36.67 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.43 Total: -4.45 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.74 -7.96 -38.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306583300.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.561 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds