Wall clock time and date at job start Mon Mar 30 2020 02:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.76208 * 103.00050 * 2 1 4 4 C 1.39054 * 120.04006 * 0.29443 * 3 2 1 5 5 C 1.38108 * 120.06571 * 180.23814 * 4 3 2 6 6 C 1.38194 * 120.15282 * 359.48792 * 5 4 3 7 7 C 1.50700 * 119.95681 * 180.25737 * 6 5 4 8 8 C 1.50703 * 109.47119 * 265.00129 * 7 6 5 9 9 H 1.07992 * 120.00044 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99715 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00510 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99813 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47108 * 59.99702 * 12 10 8 14 14 H 1.48497 * 109.47090 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46609 * 299.99768 * 12 10 8 16 16 C 1.38970 * 120.08654 * 0.23866 * 6 5 4 17 17 N 1.39664 * 120.03369 * 180.02562 * 16 6 5 18 18 C 1.38777 * 119.92914 * 0.02562 * 16 6 5 19 19 H 1.08994 * 109.47518 * 60.00233 * 1 2 3 20 20 H 1.09000 * 109.47048 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47159 * 300.00056 * 1 2 3 22 22 H 1.07996 * 119.96603 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.92597 * 179.77339 * 5 4 3 24 24 H 1.08997 * 109.47242 * 25.00517 * 7 6 5 25 25 H 1.09001 * 109.47055 * 145.00457 * 7 6 5 26 26 H 0.96999 * 120.00426 * 180.02562 * 11 10 8 27 27 H 0.96999 * 120.00820 * 359.97438 * 17 16 6 28 28 H 0.97007 * 119.99829 * 180.02562 * 17 16 6 29 29 H 1.07991 * 120.07373 * 179.97438 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1940 2.6660 0.0062 5 6 1.5041 4.0118 0.0012 6 6 2.8244 4.4200 0.0008 7 6 3.1576 5.8896 0.0012 8 6 3.3888 6.3527 -1.4141 9 1 3.3026 5.6530 -2.2321 10 6 3.7104 7.6698 -1.6646 11 7 3.8160 8.5220 -0.6684 12 14 3.9963 8.2441 -3.4191 13 1 2.7675 8.0160 -4.2210 14 1 4.3248 9.6922 -3.4187 15 1 5.1233 7.4805 -4.0123 16 6 3.8451 3.4769 0.0003 17 7 5.1791 3.8907 0.0004 18 6 3.5375 2.1237 -0.0002 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.1612 2.3503 0.0106 23 1 0.7129 4.7470 0.0023 24 1 2.3300 6.4498 0.4362 25 1 4.0593 6.0575 0.5903 26 1 4.0419 9.4487 -0.8447 27 1 5.3936 4.8366 0.0004 28 1 5.8912 3.2319 -0.0003 29 1 4.3289 1.3888 -0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306725284.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:26 Heat of formation + Delta-G solvation = 9.465173 kcal Electronic energy + Delta-G solvation = -12669.411361 eV Core-core repulsion = 10489.795329 eV Total energy + Delta-G solvation = -2179.616032 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.77767 -34.05546 -33.21079 -31.14890 -29.38402 -28.04460 -26.73941 -23.41263 -21.67655 -20.30954 -17.34442 -16.35270 -16.28300 -15.25726 -14.93954 -14.45644 -13.70459 -13.62720 -13.52176 -12.82339 -12.76924 -12.28366 -12.00344 -11.55959 -11.25608 -10.95487 -10.63648 -10.41069 -10.30430 -10.02009 -9.59013 -9.42424 -8.61839 -8.44847 -7.25132 -6.64567 -6.04246 -4.10572 1.81680 1.98340 2.23696 2.69883 3.29797 3.34288 3.37886 4.36534 4.54804 4.65691 5.10713 5.13320 5.27128 5.51894 5.58127 5.73205 5.99174 6.21423 6.41793 6.48542 6.81961 6.96956 7.15273 7.41007 7.58878 7.76410 7.89676 8.19919 8.32260 8.52178 8.95450 9.53849 11.02532 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.044510 B = 0.006549 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.928160 B = 4274.690794 C = 4428.156870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.148 6.148 3 C -0.060 4.060 4 C -0.191 4.191 5 C -0.067 4.067 6 C -0.110 4.110 7 C 0.057 3.943 8 C -0.510 4.510 9 H 0.056 0.944 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.894 3.106 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.232 3.768 17 N -0.870 5.870 18 C -0.187 4.187 19 H 0.082 0.918 20 H 0.100 0.900 21 H 0.081 0.919 22 H 0.110 0.890 23 H 0.119 0.881 24 H 0.028 0.972 25 H 0.024 0.976 26 H 0.262 0.738 27 H 0.410 0.590 28 H 0.387 0.613 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -12.570 1.967 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.092 5.908 3 C -0.172 4.172 4 C -0.216 4.216 5 C -0.087 4.087 6 C -0.115 4.115 7 C 0.020 3.980 8 C -0.548 4.548 9 H 0.074 0.926 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.125 3.875 17 N -0.410 5.410 18 C -0.215 4.215 19 H 0.101 0.899 20 H 0.118 0.882 21 H 0.100 0.900 22 H 0.128 0.872 23 H 0.137 0.863 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.242 0.758 28 H 0.213 0.787 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.402 -13.410 2.010 13.771 hybrid contribution -0.334 1.616 -1.040 1.951 sum -2.737 -11.794 0.970 12.146 Atomic orbital electron populations 1.23553 0.95208 1.06156 1.05636 1.85092 1.06114 1.05791 1.93831 1.21002 0.96048 0.94479 1.05714 1.20744 0.96985 0.93269 1.10631 1.20704 0.95988 0.94301 0.97728 1.20249 0.91549 0.97838 1.01911 1.18148 0.97355 0.85116 0.97351 1.21065 1.47384 0.94248 0.92116 0.92604 1.25014 0.95474 0.96757 0.97060 1.69944 1.48508 1.04086 1.30826 0.86625 0.78792 0.77461 0.84967 1.20207 1.21309 1.20260 1.17471 0.85472 0.91418 0.93140 1.42570 1.03189 1.10902 1.84296 1.19901 0.94339 0.93770 1.13497 0.89931 0.88166 0.89972 0.87249 0.86273 0.95392 0.95772 0.92811 0.75772 0.78663 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.15 101.05 0.92 -0.54 15 2 S -0.15 -2.12 22.56 -107.50 -2.43 -4.55 15 3 C -0.06 -1.05 6.11 -39.07 -0.24 -1.29 15 4 C -0.19 -3.37 9.36 -39.33 -0.37 -3.74 15 5 C -0.07 -1.33 9.66 -39.65 -0.38 -1.71 15 6 C -0.11 -2.40 5.09 -104.37 -0.53 -2.93 15 7 C 0.06 1.44 4.53 -29.03 -0.13 1.31 15 8 C -0.51 -13.89 9.09 -34.44 -0.31 -14.20 15 9 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 11 N -0.89 -25.77 13.29 55.43 0.74 -25.03 15 12 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 15 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 16 C 0.23 4.61 6.73 -83.82 -0.56 4.04 15 17 N -0.87 -15.37 8.99 32.40 0.29 -15.08 15 18 C -0.19 -3.39 9.64 -39.17 -0.38 -3.76 15 19 H 0.08 0.87 7.76 -51.93 -0.40 0.46 15 20 H 0.10 0.84 8.14 -51.92 -0.42 0.41 15 21 H 0.08 0.84 7.73 -51.92 -0.40 0.44 15 22 H 0.11 1.64 5.87 -52.49 -0.31 1.33 15 23 H 0.12 2.26 8.06 -52.49 -0.42 1.84 15 24 H 0.03 0.74 8.05 -51.93 -0.42 0.32 15 25 H 0.02 0.62 6.81 -51.93 -0.35 0.27 15 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 27 H 0.41 7.85 6.93 -40.82 -0.28 7.57 15 28 H 0.39 5.50 8.84 -40.82 -0.36 5.14 15 29 H 0.11 1.85 8.06 -52.49 -0.42 1.42 15 LS Contribution 262.81 15.07 3.96 3.96 Total: -1.00 -29.30 262.81 -7.88 -37.18 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -3.34 Total: 8.55 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -2.08 Total: -21.31 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 1.03 Total: -40.11 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.43 Total: -4.55 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.30 -7.88 -37.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306725284.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.642 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds