Wall clock time and date at job start Mon Mar 30 2020 02:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.76208 * 103.00050 * 2 1 4 4 C 1.39054 * 120.04006 * 0.29443 * 3 2 1 5 5 C 1.38108 * 120.06571 * 180.23814 * 4 3 2 6 6 C 1.38194 * 120.15282 * 359.48792 * 5 4 3 7 7 C 1.50700 * 119.95681 * 180.25737 * 6 5 4 8 8 C 1.50703 * 109.47119 * 265.00129 * 7 6 5 9 9 H 1.07992 * 120.00044 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99715 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00510 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99813 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47108 * 59.99702 * 12 10 8 14 14 H 1.48497 * 109.47090 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46609 * 299.99768 * 12 10 8 16 16 C 1.38970 * 120.08654 * 0.23866 * 6 5 4 17 17 N 1.39664 * 120.03369 * 180.02562 * 16 6 5 18 18 C 1.38777 * 119.92914 * 0.02562 * 16 6 5 19 19 H 1.08994 * 109.47518 * 60.00233 * 1 2 3 20 20 H 1.09000 * 109.47048 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47159 * 300.00056 * 1 2 3 22 22 H 1.07996 * 119.96603 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.92597 * 179.77339 * 5 4 3 24 24 H 1.08997 * 109.47242 * 25.00517 * 7 6 5 25 25 H 1.09001 * 109.47055 * 145.00457 * 7 6 5 26 26 H 0.96999 * 120.00426 * 180.02562 * 11 10 8 27 27 H 0.96999 * 120.00820 * 359.97438 * 17 16 6 28 28 H 0.97007 * 119.99829 * 180.02562 * 17 16 6 29 29 H 1.07991 * 120.07373 * 179.97438 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1940 2.6660 0.0062 5 6 1.5041 4.0118 0.0012 6 6 2.8244 4.4200 0.0008 7 6 3.1576 5.8896 0.0012 8 6 3.3888 6.3527 -1.4141 9 1 3.3026 5.6530 -2.2321 10 6 3.7104 7.6698 -1.6646 11 7 3.8160 8.5220 -0.6684 12 14 3.9963 8.2441 -3.4191 13 1 2.7675 8.0160 -4.2210 14 1 4.3248 9.6922 -3.4187 15 1 5.1233 7.4805 -4.0123 16 6 3.8451 3.4769 0.0003 17 7 5.1791 3.8907 0.0004 18 6 3.5375 2.1237 -0.0002 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.1612 2.3503 0.0106 23 1 0.7129 4.7470 0.0023 24 1 2.3300 6.4498 0.4362 25 1 4.0593 6.0575 0.5903 26 1 4.0419 9.4487 -0.8447 27 1 5.3936 4.8366 0.0004 28 1 5.8912 3.2319 -0.0003 29 1 4.3289 1.3888 -0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306725284.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:25 Heat of formation + Delta-G solvation = -7.934107 kcal Electronic energy + Delta-G solvation = -12670.165851 eV Core-core repulsion = 10489.795329 eV Total energy + Delta-G solvation = -2180.370522 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.27205 -35.66027 -35.04420 -32.91200 -30.43823 -29.52872 -28.36261 -25.31530 -23.16644 -21.91480 -18.68415 -18.44584 -17.78160 -16.85360 -16.24031 -16.13960 -15.04330 -14.85516 -14.77105 -14.42760 -14.22753 -13.74901 -13.42800 -13.33823 -12.95237 -12.69717 -12.40806 -12.09186 -11.73733 -11.54069 -11.48887 -11.01255 -10.57703 -10.12058 -8.54840 -8.28174 -7.92409 -6.29385 0.49080 0.70714 0.77396 1.40287 1.41545 1.49975 1.59360 2.40445 3.00198 3.12883 3.23209 4.07183 4.28188 4.34140 4.36840 4.44222 4.71065 4.88453 4.92041 5.04531 5.22686 5.38880 5.40759 5.56867 5.77078 5.96958 6.02975 6.23235 6.72347 6.82204 7.15178 7.38965 8.90839 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.044510 B = 0.006549 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.928160 B = 4274.690794 C = 4428.156870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.145 6.145 3 C -0.062 4.062 4 C -0.191 4.191 5 C -0.074 4.074 6 C -0.149 4.149 7 C 0.070 3.930 8 C -0.518 4.518 9 H 0.048 0.952 10 C 0.009 3.991 11 N -0.927 5.927 12 Si 0.958 3.042 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.224 3.776 17 N -0.865 5.865 18 C -0.191 4.191 19 H 0.087 0.913 20 H 0.129 0.871 21 H 0.090 0.910 22 H 0.139 0.861 23 H 0.118 0.882 24 H -0.001 1.001 25 H 0.008 0.992 26 H 0.264 0.736 27 H 0.402 0.598 28 H 0.403 0.597 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -14.590 1.139 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.095 5.905 3 C -0.174 4.174 4 C -0.216 4.216 5 C -0.095 4.095 6 C -0.155 4.155 7 C 0.033 3.967 8 C -0.556 4.556 9 H 0.066 0.934 10 C -0.189 4.189 11 N -0.567 5.567 12 Si 0.784 3.216 13 H -0.198 1.198 14 H -0.207 1.207 15 H -0.195 1.195 16 C 0.116 3.884 17 N -0.405 5.405 18 C -0.219 4.219 19 H 0.106 0.894 20 H 0.147 0.853 21 H 0.109 0.891 22 H 0.157 0.843 23 H 0.136 0.864 24 H 0.017 0.983 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.232 0.768 28 H 0.232 0.768 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.040 -15.468 1.183 15.809 hybrid contribution -0.208 2.100 -0.736 2.235 sum -3.248 -13.368 0.448 13.765 Atomic orbital electron populations 1.23734 0.91897 1.08311 1.06317 1.85125 1.09725 1.02403 1.93208 1.21403 0.95806 0.96868 1.03361 1.20983 0.98633 0.92133 1.09882 1.20809 0.95241 0.95723 0.97729 1.20045 0.93247 0.96212 1.06029 1.17853 0.95387 0.87507 0.95917 1.21281 1.47081 0.94366 0.92902 0.93418 1.25815 0.95197 0.96875 1.01054 1.70059 1.49401 1.04397 1.32889 0.85602 0.78836 0.77122 0.80079 1.19795 1.20737 1.19459 1.17593 0.85630 0.91972 0.93156 1.42516 1.03210 1.10844 1.83933 1.20145 0.95496 0.93223 1.13069 0.89391 0.85290 0.89141 0.84342 0.86428 0.98284 0.97353 0.92676 0.76794 0.76760 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.15 113.37 1.04 -1.27 15 2 S -0.14 -3.69 22.56 -56.49 -1.27 -4.96 15 3 C -0.06 -2.03 6.11 22.60 0.14 -1.89 15 4 C -0.19 -6.41 9.36 22.43 0.21 -6.20 15 5 C -0.07 -2.98 9.66 22.23 0.21 -2.77 15 6 C -0.15 -6.68 5.09 -19.70 -0.10 -6.78 15 7 C 0.07 3.70 4.53 29.10 0.13 3.83 15 8 C -0.52 -28.94 9.09 25.60 0.23 -28.70 15 9 H 0.05 2.69 7.74 -2.91 -0.02 2.66 15 10 C 0.01 0.50 5.46 84.65 0.46 0.96 15 11 N -0.93 -54.62 13.29 21.45 0.28 -54.34 15 12 Si 0.96 43.93 29.54 68.60 2.03 45.95 15 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 16 C 0.22 8.90 6.73 38.20 0.26 9.16 15 17 N -0.87 -30.72 8.99 -51.42 -0.46 -31.19 15 18 C -0.19 -6.65 9.64 22.54 0.22 -6.43 15 19 H 0.09 1.48 7.76 -2.39 -0.02 1.47 15 20 H 0.13 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.09 1.47 7.73 -2.39 -0.02 1.45 15 22 H 0.14 3.73 5.87 -2.91 -0.02 3.72 15 23 H 0.12 4.58 8.06 -2.91 -0.02 4.55 15 24 H 0.00 -0.07 8.05 -2.39 -0.02 -0.09 15 25 H 0.01 0.45 6.81 -2.39 -0.02 0.44 15 26 H 0.26 14.72 8.31 -92.71 -0.77 13.95 15 27 H 0.40 15.83 6.93 -92.71 -0.64 15.19 15 28 H 0.40 11.21 8.84 -92.70 -0.82 10.39 15 29 H 0.13 4.03 8.06 -2.92 -0.02 4.01 15 Total: -1.00 -63.15 262.81 3.09 -60.06 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -0.29 Total: 24.58 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 2.80 Total: -40.10 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -0.18 Total: -85.52 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.27 Total: -4.96 kcal Total: -63.15 3.09 -60.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306725284.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.127 kcal (2) G-P(sol) polarization free energy of solvation -63.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds