Wall clock time and date at job start Mon Mar 30 2020 02:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76201 * 103.00373 * 2 1 4 4 C 1.39058 * 120.03953 * 359.97438 * 3 2 1 5 5 C 1.38109 * 120.06716 * 179.97438 * 4 3 2 6 6 C 1.38195 * 120.15349 * 0.04644 * 5 4 3 7 7 C 1.38967 * 120.08552 * 0.23436 * 6 5 4 8 8 N 1.39664 * 120.03259 * 179.74056 * 7 6 5 9 9 C 1.38778 * 119.92806 * 359.46893 * 7 6 5 10 10 C 1.50698 * 120.07486 * 180.28033 * 9 7 6 11 11 C 1.50699 * 109.46966 * 270.27069 * 10 9 7 12 12 H 1.08009 * 119.99838 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00316 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00127 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00179 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47281 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47447 * 120.00119 * 15 13 11 18 18 H 1.48508 * 109.47268 * 240.00035 * 15 13 11 19 19 H 1.09000 * 109.46817 * 299.99946 * 1 2 3 20 20 H 1.08995 * 109.47071 * 59.99566 * 1 2 3 21 21 H 1.09001 * 109.47027 * 180.02562 * 1 2 3 22 22 H 1.08006 * 119.96477 * 359.97438 * 4 3 2 23 23 H 1.07996 * 119.91946 * 180.02562 * 5 4 3 24 24 H 1.08002 * 119.95402 * 179.97438 * 6 5 4 25 25 H 0.97000 * 120.00192 * 0.02562 * 8 7 6 26 26 H 0.96999 * 119.99838 * 179.97438 * 8 7 6 27 27 H 1.08998 * 109.47229 * 30.27002 * 10 9 7 28 28 H 1.08999 * 109.47400 * 150.27498 * 10 9 7 29 29 H 0.96995 * 120.00140 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1942 2.6660 -0.0005 5 6 1.5043 4.0118 0.0000 6 6 2.8246 4.4199 0.0001 7 6 3.8453 3.4768 -0.0053 8 7 5.1793 3.8906 -0.0106 9 6 3.5377 2.1236 0.0004 10 6 4.6419 1.0981 0.0010 11 6 5.0106 0.7561 -1.4196 12 1 4.4969 1.2340 -2.2408 13 6 6.0036 -0.1667 -1.6711 14 7 6.6295 -0.7482 -0.6712 15 14 6.4611 -0.5900 -3.4320 16 1 5.6155 0.1962 -4.3658 17 1 7.8911 -0.2636 -3.6642 18 1 6.2399 -2.0398 -3.6661 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 0.1613 2.3503 -0.0014 23 1 0.7132 4.7469 0.0000 24 1 3.0635 5.4732 0.0001 25 1 5.3937 4.8366 -0.0102 26 1 5.8913 3.2319 -0.0140 27 1 5.5136 1.5030 0.5152 28 1 4.3023 0.1987 0.5147 29 1 7.3283 -1.3972 -0.8481 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306835384.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:27 Heat of formation + Delta-G solvation = 13.482361 kcal Electronic energy + Delta-G solvation = -12954.541768 eV Core-core repulsion = 10775.099934 eV Total energy + Delta-G solvation = -2179.441834 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.73760 -34.02862 -33.17688 -31.09508 -29.31151 -27.64796 -26.72512 -23.30111 -21.85049 -20.14258 -17.09608 -16.34897 -16.24405 -15.23164 -14.74588 -14.32373 -13.65567 -13.48349 -13.41994 -12.75392 -12.60240 -12.08016 -11.86897 -11.41583 -11.07968 -10.88825 -10.57373 -10.42689 -10.22883 -9.74551 -9.44764 -9.12050 -8.66207 -8.35700 -6.78186 -6.63291 -5.96475 -4.00084 2.02120 2.22719 2.29043 3.17602 3.32749 3.40782 3.46471 4.42304 4.57398 4.65855 5.36465 5.41237 5.42532 5.48147 5.72162 5.78922 5.98087 6.25859 6.33876 6.56957 6.86012 7.08761 7.10750 7.41051 7.61419 7.76759 7.98112 8.21615 8.38734 8.52228 9.04099 9.62924 11.11604 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.023949 B = 0.011109 C = 0.008537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.874746 B = 2519.892197 C = 3279.201024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 S -0.073 6.073 3 C -0.051 4.051 4 C -0.198 4.198 5 C -0.081 4.081 6 C -0.214 4.214 7 C 0.229 3.771 8 N -0.872 5.872 9 C -0.095 4.095 10 C 0.057 3.943 11 C -0.498 4.498 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.284 1.284 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.097 0.903 22 H 0.109 0.891 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.387 0.613 26 H 0.409 0.591 27 H 0.024 0.976 28 H 0.037 0.963 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.560 6.405 1.976 10.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.335 4.335 2 S 0.170 5.830 3 C -0.164 4.164 4 C -0.223 4.223 5 C -0.102 4.102 6 C -0.239 4.239 7 C 0.122 3.878 8 N -0.411 5.411 9 C -0.105 4.105 10 C 0.020 3.980 11 C -0.536 4.536 12 H 0.074 0.926 13 C -0.142 4.142 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.210 1.210 19 H 0.093 0.907 20 H 0.095 0.905 21 H 0.116 0.884 22 H 0.127 0.873 23 H 0.129 0.871 24 H 0.128 0.872 25 H 0.214 0.786 26 H 0.240 0.760 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.825 5.169 2.010 9.591 hybrid contribution -0.221 1.039 -1.027 1.477 sum -8.046 6.208 0.983 10.210 Atomic orbital electron populations 1.23737 0.99296 1.05838 1.04629 1.86157 1.01118 1.03653 1.92062 1.21340 0.95653 0.95959 1.03469 1.20724 0.97208 0.93136 1.11269 1.20449 0.95311 0.94782 0.99609 1.20419 0.92377 0.97632 1.13517 1.17499 0.84918 0.92107 0.93282 1.42571 1.04570 1.09490 1.84516 1.19796 0.94152 0.93549 1.03046 1.18157 0.90213 0.91821 0.97805 1.21024 1.18255 1.22990 0.91347 0.92622 1.24961 0.96320 0.96011 0.96889 1.69963 1.24741 1.28325 1.30428 0.86546 0.78001 0.78311 0.85263 1.19765 1.21192 1.20967 0.90739 0.90545 0.88403 0.87287 0.87142 0.87232 0.78624 0.75963 0.95796 0.94465 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.15 101.05 0.92 -1.40 15 2 S -0.07 -1.45 20.77 -107.50 -2.23 -3.68 15 3 C -0.05 -1.06 6.11 -39.06 -0.24 -1.29 15 4 C -0.20 -3.54 9.36 -39.32 -0.37 -3.91 15 5 C -0.08 -1.34 10.03 -39.64 -0.40 -1.74 15 6 C -0.21 -3.70 9.89 -39.33 -0.39 -4.09 15 7 C 0.23 4.56 6.73 -83.82 -0.56 3.99 15 8 N -0.87 -15.30 8.99 32.39 0.29 -15.01 15 9 C -0.10 -2.16 5.11 -104.21 -0.53 -2.69 15 10 C 0.06 1.48 4.21 -29.04 -0.12 1.36 15 11 C -0.50 -13.83 9.09 -34.44 -0.31 -14.15 15 12 H 0.06 1.59 7.74 -52.48 -0.41 1.19 15 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 14 N -0.89 -26.26 13.29 55.43 0.74 -25.52 15 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 15 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 19 H 0.07 0.94 7.75 -51.92 -0.40 0.54 15 20 H 0.08 1.01 7.74 -51.93 -0.40 0.61 15 21 H 0.10 1.17 8.14 -51.92 -0.42 0.75 15 22 H 0.11 1.68 5.87 -52.48 -0.31 1.37 15 23 H 0.11 1.47 8.06 -52.49 -0.42 1.05 15 24 H 0.11 1.58 8.06 -52.49 -0.42 1.16 15 25 H 0.39 5.36 8.84 -40.82 -0.36 5.00 15 26 H 0.41 7.82 6.83 -40.82 -0.28 7.54 15 27 H 0.02 0.63 6.56 -51.93 -0.34 0.29 15 28 H 0.04 1.04 6.78 -51.93 -0.35 0.69 15 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 LS Contribution 259.73 15.07 3.91 3.91 Total: -1.00 -30.38 259.73 -7.66 -38.04 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -3.25 Total: 7.85 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.10 Total: -22.35 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 1.03 Total: -40.53 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.23 Total: -3.68 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.38 -7.66 -38.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306835384.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.523 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds