Wall clock time and date at job start Mon Mar 30 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48505 * 109.47209 * 269.99924 * 3 2 1 5 5 H 1.48501 * 109.47422 * 30.00104 * 3 2 1 6 6 H 1.48504 * 109.47192 * 150.00061 * 3 2 1 7 7 C 1.38813 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99895 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00564 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64542 * 359.69503 * 9 7 2 11 11 C 1.54910 * 104.83231 * 156.13438 * 10 9 7 12 12 C 1.55160 * 101.58122 * 37.00939 * 11 10 9 13 13 H 1.09002 * 110.71871 * 82.86501 * 12 11 10 14 14 C 1.53001 * 110.87080 * 206.06270 * 12 11 10 15 15 C 1.52998 * 109.46896 * 180.02562 * 14 12 11 16 16 F 1.39894 * 109.47825 * 59.99828 * 15 14 12 17 17 F 1.39905 * 109.47154 * 180.02562 * 15 14 12 18 18 F 1.39901 * 109.46759 * 299.99589 * 15 14 12 19 19 C 1.47026 * 125.65326 * 180.02562 * 9 7 2 20 20 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 21 21 H 1.09001 * 110.36478 * 274.97390 * 10 9 7 22 22 H 1.08998 * 110.36859 * 37.29768 * 10 9 7 23 23 H 1.08991 * 111.00552 * 278.93287 * 11 10 9 24 24 H 1.09004 * 111.03615 * 155.09334 * 11 10 9 25 25 H 1.08999 * 109.47085 * 300.06326 * 14 12 11 26 26 H 1.08992 * 109.47027 * 60.06218 * 14 12 11 27 27 H 1.09004 * 109.87531 * 300.21350 * 19 9 7 28 28 H 1.08996 * 109.88343 * 61.22069 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0064 11 6 -0.4045 -3.9332 -0.6022 12 6 0.7781 -4.7525 -0.0213 13 1 0.5502 -5.0966 0.9875 14 6 1.1205 -5.9349 -0.9300 15 6 2.2878 -6.7195 -0.3278 16 9 1.9278 -7.1933 0.9382 17 9 2.6013 -7.8004 -1.1590 18 9 3.4025 -5.8819 -0.2126 19 6 1.9316 -3.7276 -0.0005 20 1 -0.4850 0.8401 0.0004 21 1 -0.5227 -2.4852 1.0265 22 1 -0.6022 -1.7598 -0.6083 23 1 -0.3599 -3.9007 -1.6907 24 1 -1.3604 -4.3336 -0.2642 25 1 0.2518 -6.5871 -1.0203 26 1 1.4018 -5.5657 -1.9161 27 1 2.5544 -3.8525 -0.8864 28 1 2.5340 -3.8619 0.8978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307236215.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:51 Heat of formation + Delta-G solvation = -139.535076 kcal Electronic energy + Delta-G solvation = -15910.560393 eV Core-core repulsion = 12739.873613 eV Total energy + Delta-G solvation = -3170.686779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.91605 -47.44192 -47.35255 -37.72256 -33.49956 -31.08601 -28.99414 -26.72050 -24.64620 -22.63985 -20.27710 -19.81480 -18.33213 -18.14373 -17.06421 -16.70414 -15.24535 -14.61673 -14.35623 -14.17317 -13.82900 -13.74357 -13.53824 -13.45712 -12.84935 -12.52818 -12.23890 -11.96894 -11.57775 -11.34529 -10.94623 -10.78308 -10.26734 -10.11632 -10.04496 -9.79208 -9.53369 -8.64438 -6.82264 -5.64671 -3.06020 2.98118 3.41123 3.46142 3.48286 4.01204 4.21263 4.25924 4.50788 5.07722 5.15740 5.36768 5.50434 5.57538 5.72854 5.92517 5.98241 6.30847 6.52018 6.54898 6.73174 6.88886 7.50232 7.64210 7.84843 8.36606 9.23308 9.84046 10.48849 11.39579 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.052029 B = 0.007326 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.033580 B = 3821.082081 C = 4144.625479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.108 4.108 13 H 0.082 0.918 14 C -0.152 4.152 15 C 0.449 3.551 16 F -0.187 7.187 17 F -0.193 7.193 18 F -0.177 7.177 19 C 0.138 3.862 20 H 0.252 0.748 21 H 0.012 0.988 22 H 0.108 0.892 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.028 0.972 28 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 -12.472 -1.909 12.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.173 4.173 12 C -0.127 4.127 13 H 0.101 0.899 14 C -0.191 4.191 15 C 0.395 3.605 16 F -0.168 7.168 17 F -0.175 7.175 18 F -0.159 7.159 19 C 0.013 3.987 20 H 0.062 0.938 21 H 0.030 0.970 22 H 0.126 0.874 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.123 0.877 26 H 0.127 0.873 27 H 0.046 0.954 28 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.705 -12.254 -1.882 12.418 hybrid contribution 0.698 0.599 0.203 0.942 sum 1.403 -11.655 -1.679 11.858 Atomic orbital electron populations 1.69786 1.04902 1.24746 1.57859 1.24780 0.95736 0.97712 1.02510 0.86060 0.78544 0.83265 0.77573 1.21587 1.21666 1.20720 1.19104 0.90575 0.82452 1.42810 0.90454 1.44531 1.01943 0.99782 1.86883 1.21952 0.84812 0.92360 0.98294 1.23038 0.95351 0.98756 1.00179 1.22233 0.98967 0.93178 0.98323 0.89944 1.22923 0.95352 0.98637 1.02146 1.20784 0.85338 0.78036 0.76313 1.93156 1.91717 1.89294 1.42679 1.93154 1.94142 1.58141 1.72042 1.93214 1.55824 1.70895 1.95935 1.21477 0.93125 0.85716 0.98425 0.93753 0.96962 0.87406 0.91830 0.92013 0.87687 0.87323 0.95381 0.95813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.09 55.49 0.56 -26.42 15 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 15 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 15 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 15 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 7 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 15 8 H 0.08 2.13 7.83 -52.48 -0.41 1.72 15 9 N -0.61 -15.72 3.39 -170.07 -0.58 -16.29 15 10 C 0.15 3.63 5.89 -2.53 -0.01 3.62 15 11 C -0.13 -2.42 6.54 -24.58 -0.16 -2.58 15 12 C -0.11 -1.82 2.86 -88.79 -0.25 -2.07 15 13 H 0.08 1.36 7.78 -51.93 -0.40 0.96 15 14 C -0.15 -1.98 4.77 -26.73 -0.13 -2.11 15 15 C 0.45 6.24 3.16 37.16 0.12 6.36 15 16 F -0.19 -2.69 16.78 2.25 0.04 -2.65 15 17 F -0.19 -2.57 17.32 2.25 0.04 -2.53 15 18 F -0.18 -2.82 14.62 2.25 0.03 -2.79 15 19 C 0.14 2.94 5.26 -3.07 -0.02 2.92 15 20 H 0.25 7.12 8.31 -40.82 -0.34 6.78 15 21 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 15 22 H 0.11 2.91 5.87 -51.93 -0.30 2.61 15 23 H 0.06 1.10 8.05 -51.93 -0.42 0.68 15 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.10 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.11 1.35 8.06 -51.93 -0.42 0.93 15 27 H 0.03 0.59 7.06 -51.93 -0.37 0.22 15 28 H 0.02 0.52 7.92 -51.93 -0.41 0.11 15 LS Contribution 242.63 15.07 3.66 3.66 Total: -1.00 -29.87 242.63 -5.12 -34.99 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: -3.14 Total: -4.42 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.71 Total: -0.72 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.02 Total: -42.72 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.11 Total: -7.97 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.87 -5.12 -34.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307236215.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.547 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds