Wall clock time and date at job start Mon Mar 30 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48505 * 109.47209 * 269.99924 * 3 2 1 5 5 H 1.48501 * 109.47422 * 30.00104 * 3 2 1 6 6 H 1.48504 * 109.47192 * 150.00061 * 3 2 1 7 7 C 1.38813 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99895 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00564 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64542 * 359.69503 * 9 7 2 11 11 C 1.54910 * 104.83231 * 156.13438 * 10 9 7 12 12 C 1.55160 * 101.58122 * 37.00939 * 11 10 9 13 13 H 1.09002 * 110.71871 * 82.86501 * 12 11 10 14 14 C 1.53001 * 110.87080 * 206.06270 * 12 11 10 15 15 C 1.52998 * 109.46896 * 180.02562 * 14 12 11 16 16 F 1.39894 * 109.47825 * 59.99828 * 15 14 12 17 17 F 1.39905 * 109.47154 * 180.02562 * 15 14 12 18 18 F 1.39901 * 109.46759 * 299.99589 * 15 14 12 19 19 C 1.47026 * 125.65326 * 180.02562 * 9 7 2 20 20 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 21 21 H 1.09001 * 110.36478 * 274.97390 * 10 9 7 22 22 H 1.08998 * 110.36859 * 37.29768 * 10 9 7 23 23 H 1.08991 * 111.00552 * 278.93287 * 11 10 9 24 24 H 1.09004 * 111.03615 * 155.09334 * 11 10 9 25 25 H 1.08999 * 109.47085 * 300.06326 * 14 12 11 26 26 H 1.08992 * 109.47027 * 60.06218 * 14 12 11 27 27 H 1.09004 * 109.87531 * 300.21350 * 19 9 7 28 28 H 1.08996 * 109.88343 * 61.22069 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0064 11 6 -0.4045 -3.9332 -0.6022 12 6 0.7781 -4.7525 -0.0213 13 1 0.5502 -5.0966 0.9875 14 6 1.1205 -5.9349 -0.9300 15 6 2.2878 -6.7195 -0.3278 16 9 1.9278 -7.1933 0.9382 17 9 2.6013 -7.8004 -1.1590 18 9 3.4025 -5.8819 -0.2126 19 6 1.9316 -3.7276 -0.0005 20 1 -0.4850 0.8401 0.0004 21 1 -0.5227 -2.4852 1.0265 22 1 -0.6022 -1.7598 -0.6083 23 1 -0.3599 -3.9007 -1.6907 24 1 -1.3604 -4.3336 -0.2642 25 1 0.2518 -6.5871 -1.0203 26 1 1.4018 -5.5657 -1.9161 27 1 2.5544 -3.8525 -0.8864 28 1 2.5340 -3.8619 0.8978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307236215.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:51 Heat of formation + Delta-G solvation = -157.479729 kcal Electronic energy + Delta-G solvation = -15911.338531 eV Core-core repulsion = 12739.873613 eV Total energy + Delta-G solvation = -3171.464918 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -51.02153 -48.51992 -48.49958 -39.36225 -35.26708 -32.82725 -30.71839 -28.32682 -26.48734 -23.93739 -22.09539 -21.25916 -19.45342 -19.36845 -18.75014 -18.09380 -16.94988 -16.42471 -15.68478 -15.43570 -15.28096 -14.93982 -14.68520 -14.64912 -14.26718 -14.21718 -13.63028 -13.54463 -13.26868 -12.90906 -12.77977 -12.56155 -12.01269 -11.79933 -11.67814 -11.60332 -11.31096 -10.74303 -8.88347 -7.77839 -5.22147 1.46605 1.48379 1.57196 1.89974 2.49523 2.92453 3.08932 3.19253 3.32495 3.71772 3.81617 4.03957 4.07197 4.42395 4.59215 4.69290 4.72856 4.90350 5.08916 5.12588 5.35347 5.47059 5.66576 5.82485 6.32460 7.11742 7.78967 8.42192 9.23927 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.052029 B = 0.007326 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.033580 B = 3821.082081 C = 4144.625479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.065 4.065 3 Si 0.980 3.020 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.629 5.629 10 C 0.147 3.853 11 C -0.117 4.117 12 C -0.095 4.095 13 H 0.087 0.913 14 C -0.142 4.142 15 C 0.450 3.550 16 F -0.190 7.190 17 F -0.187 7.187 18 F -0.193 7.193 19 C 0.133 3.867 20 H 0.248 0.752 21 H -0.015 1.015 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.144 0.856 26 H 0.119 0.881 27 H 0.032 0.968 28 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -13.749 -2.573 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.355 5.355 10 C 0.022 3.978 11 C -0.155 4.155 12 C -0.114 4.114 13 H 0.106 0.894 14 C -0.180 4.180 15 C 0.396 3.604 16 F -0.172 7.172 17 F -0.169 7.169 18 F -0.175 7.175 19 C 0.008 3.992 20 H 0.057 0.943 21 H 0.003 0.997 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.162 0.838 26 H 0.138 0.862 27 H 0.050 0.950 28 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 0.683 -13.565 -2.549 13.819 hybrid contribution 0.735 0.971 0.439 1.295 sum 1.418 -12.593 -2.111 12.848 Atomic orbital electron populations 1.70041 1.06127 1.25058 1.58551 1.25610 0.96672 1.00877 1.02603 0.85055 0.77494 0.79012 0.77625 1.20944 1.21866 1.19826 1.19448 0.90951 0.84007 1.42742 0.90587 1.44875 1.02991 1.00891 1.86791 1.21804 0.83875 0.95490 0.96595 1.22870 0.97325 0.94750 1.00539 1.22094 0.96342 0.93280 0.99694 0.89450 1.22893 0.96410 0.97428 1.01221 1.20903 0.85097 0.78102 0.76270 1.93154 1.91657 1.89327 1.43028 1.93168 1.94106 1.57804 1.71794 1.93189 1.56831 1.71458 1.96019 1.21656 0.94739 0.84998 0.97803 0.94260 0.99691 0.90699 0.90633 0.88762 0.83817 0.86249 0.95029 0.97054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.66 10.09 21.65 0.22 -56.44 15 2 C -0.07 -3.74 5.49 84.86 0.47 -3.27 15 3 Si 0.98 46.12 29.55 68.60 2.03 48.15 15 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 15 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 7 C -0.24 -13.94 10.27 84.03 0.86 -13.08 15 8 H 0.08 4.24 7.83 -2.91 -0.02 4.22 15 9 N -0.63 -33.02 3.39 -691.99 -2.35 -35.37 15 10 C 0.15 7.17 5.89 86.86 0.51 7.68 15 11 C -0.12 -3.91 6.54 31.99 0.21 -3.70 15 12 C -0.10 -2.96 2.86 -9.61 -0.03 -2.99 15 13 H 0.09 2.66 7.78 -2.39 -0.02 2.64 15 14 C -0.14 -3.14 4.77 30.59 0.15 -2.99 15 15 C 0.45 11.25 3.16 71.98 0.23 11.48 15 16 F -0.19 -4.99 16.78 44.97 0.75 -4.23 15 17 F -0.19 -4.41 17.32 44.97 0.78 -3.64 15 18 F -0.19 -5.86 14.62 44.97 0.66 -5.20 15 19 C 0.13 5.56 5.26 86.73 0.46 6.01 15 20 H 0.25 14.32 8.31 -92.71 -0.77 13.55 15 21 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 15 22 H 0.08 4.15 5.87 -2.39 -0.01 4.14 15 23 H 0.08 2.38 8.05 -2.39 -0.02 2.36 15 24 H 0.09 2.58 8.14 -2.39 -0.02 2.56 15 25 H 0.14 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.12 2.48 8.06 -2.39 -0.02 2.46 15 27 H 0.03 1.30 7.06 -2.38 -0.02 1.28 15 28 H 0.01 0.50 7.92 -2.39 -0.02 0.48 15 Total: -1.00 -65.55 242.63 6.10 -59.45 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: 1.16 Total: -1.87 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 2.85 Total: -0.85 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -2.13 Total: -91.81 kcal Atomic # 9 Polarization: -15.26 SS G_CDS: 2.19 Total: -13.07 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -65.55 6.10 -59.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307236215.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.028 kcal (2) G-P(sol) polarization free energy of solvation -65.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds