Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.34049 * 122.79189 * 269.71589 * 10 9 7 12 12 O 1.21226 * 125.41679 * 359.94542 * 11 10 9 13 13 C 1.51599 * 109.16148 * 179.83850 * 11 10 9 14 14 C 1.53266 * 103.09963 * 0.37393 * 13 11 10 15 15 C 1.52707 * 115.82667 * 129.16893 * 14 13 11 16 16 C 1.53976 * 86.75415 * 93.13122 * 15 14 13 17 17 C 1.52721 * 115.81901 * 230.42839 * 14 13 11 18 18 C 1.34247 * 122.79277 * 89.99965 * 10 9 7 19 19 O 1.21227 * 125.64123 * 359.97438 * 18 10 9 20 20 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.09003 * 110.87920 * 241.88708 * 13 11 10 24 24 H 1.08997 * 110.65015 * 118.75892 * 13 11 10 25 25 H 1.09005 * 113.67104 * 207.59551 * 15 14 13 26 26 H 1.09001 * 113.67070 * 338.66887 * 15 14 13 27 27 H 1.09000 * 113.58261 * 270.02515 * 16 15 14 28 28 H 1.09003 * 113.65238 * 139.24193 * 16 15 14 29 29 H 1.08992 * 113.67209 * 21.32748 * 17 14 13 30 30 H 1.09006 * 113.66504 * 152.30687 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 4.2474 -3.2578 1.1259 12 8 4.1040 -2.8310 2.2515 13 6 4.7329 -4.6488 0.7688 14 6 4.7274 -4.6359 -0.7638 15 6 6.0173 -5.0986 -1.4376 16 6 5.3859 -6.5022 -1.4848 17 6 4.0132 -5.8063 -1.4363 18 6 4.2416 -3.2612 -1.1295 19 8 4.0923 -2.8414 -2.2569 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6801 -0.8911 22 1 3.8751 -0.6805 0.8889 23 1 4.0501 -5.4083 1.1499 24 1 5.7410 -4.8135 1.1490 25 1 6.1793 -4.6584 -2.4215 26 1 6.8945 -5.0349 -0.7938 27 1 5.5998 -7.1065 -0.6033 28 1 5.5723 -7.0344 -2.4176 29 1 3.2912 -6.3073 -0.7915 30 1 3.6081 -5.5653 -2.4192 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307488411.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = -44.425938 kcal Electronic energy + Delta-G solvation = -15491.496336 eV Core-core repulsion = 12866.790539 eV Total energy + Delta-G solvation = -2624.705797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.70302 -38.45661 -37.50216 -35.10963 -32.92298 -30.87705 -27.63530 -25.93335 -25.48640 -22.78544 -22.24186 -19.38282 -18.75399 -17.21197 -16.42354 -16.01350 -15.76402 -15.35340 -14.61610 -14.09276 -13.75380 -13.61053 -13.16882 -12.93426 -12.49082 -12.32175 -11.96571 -11.45692 -11.36306 -11.28714 -10.75563 -10.68488 -10.50900 -10.36881 -9.86988 -9.61386 -9.29339 -8.67873 -8.65136 -6.16771 -4.18246 2.04497 3.19144 3.25304 3.29901 3.33054 3.41145 4.21830 4.29805 4.33041 4.54553 4.68313 4.70191 4.88741 5.15221 5.20751 5.54537 5.57203 5.68673 5.69363 5.78926 5.86518 6.01527 6.24668 6.35831 6.55693 6.67908 7.42686 7.67022 7.96816 8.26795 8.51356 8.82243 9.40234 10.96154 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.040956 B = 0.008615 C = 0.008134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.499103 B = 3249.386193 C = 3441.350381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.201 3.799 10 N -0.553 5.553 11 C 0.525 3.475 12 O -0.486 6.486 13 C -0.135 4.135 14 C -0.135 4.135 15 C -0.110 4.110 16 C -0.136 4.136 17 C -0.109 4.109 18 C 0.539 3.461 19 O -0.480 6.480 20 H 0.267 0.733 21 H 0.043 0.957 22 H 0.048 0.952 23 H 0.116 0.884 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.119 -11.802 -1.533 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.094 0.906 9 C 0.082 3.918 10 N -0.293 5.293 11 C 0.314 3.686 12 O -0.358 6.358 13 C -0.174 4.174 14 C -0.139 4.139 15 C -0.147 4.147 16 C -0.173 4.173 17 C -0.147 4.147 18 C 0.327 3.673 19 O -0.352 6.352 20 H 0.077 0.923 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.134 0.866 24 H 0.132 0.868 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.769 -11.153 -1.530 16.286 hybrid contribution 0.121 1.063 0.040 1.070 sum 11.890 -10.090 -1.490 15.665 Atomic orbital electron populations 1.69882 1.06168 1.27274 1.49491 1.24803 0.94843 0.98988 0.93972 0.86841 0.80454 0.83581 0.78898 1.19703 1.20601 1.18852 1.21100 0.88234 0.95306 1.52817 0.90590 1.19996 0.96936 0.76185 0.98689 1.46853 1.57078 1.17348 1.08052 1.20642 0.75976 0.87714 0.84313 1.90718 1.49531 1.74132 1.21415 1.22253 1.05014 0.96605 0.93565 1.22125 1.01203 0.94553 0.96005 1.22715 0.94313 0.96289 1.01410 1.22898 0.95777 0.96027 1.02593 1.22716 0.96859 0.93468 1.01665 1.20169 0.75813 0.86954 0.84347 1.90686 1.49176 1.74132 1.21172 0.92280 0.93914 0.93402 0.86560 0.86791 0.88761 0.90421 0.89697 0.90807 0.90249 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.54 -15.90 9.94 -34.44 -0.34 -16.24 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.20 5.13 4.39 -5.19 -0.02 5.10 16 10 N -0.55 -12.06 2.55 -116.76 -0.30 -12.35 16 11 C 0.53 10.23 8.10 -10.87 -0.09 10.14 16 12 O -0.49 -11.04 17.48 5.60 0.10 -10.95 16 13 C -0.13 -1.73 6.38 -27.30 -0.17 -1.91 16 14 C -0.14 -1.84 1.16 -156.02 -0.18 -2.02 16 15 C -0.11 -1.13 7.38 -26.37 -0.19 -1.33 16 16 C -0.14 -1.15 7.95 -25.73 -0.20 -1.35 16 17 C -0.11 -1.25 7.38 -26.37 -0.19 -1.44 16 18 C 0.54 10.57 7.34 -11.41 -0.08 10.48 16 19 O -0.48 -10.82 17.51 5.60 0.10 -10.72 16 20 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 21 H 0.04 1.08 7.28 -51.93 -0.38 0.70 16 22 H 0.05 1.23 6.88 -51.93 -0.36 0.87 16 23 H 0.12 1.28 7.80 -51.93 -0.40 0.87 16 24 H 0.11 1.12 7.80 -51.93 -0.40 0.71 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.08 0.66 7.90 -51.93 -0.41 0.25 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 259.70 15.07 3.91 3.91 Total: -1.00 -34.63 259.70 -5.31 -39.94 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -3.65 Total: -3.63 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.58 Total: 3.64 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.48 Total: -39.30 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.20 Total: -21.67 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -34.63 -5.31 -39.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307488411.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.482 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds