Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.34049 * 122.79189 * 269.71589 * 10 9 7 12 12 O 1.21226 * 125.41679 * 359.94542 * 11 10 9 13 13 C 1.51599 * 109.16148 * 179.83850 * 11 10 9 14 14 C 1.53266 * 103.09963 * 0.37393 * 13 11 10 15 15 C 1.52707 * 115.82667 * 129.16893 * 14 13 11 16 16 C 1.53976 * 86.75415 * 93.13122 * 15 14 13 17 17 C 1.52721 * 115.81901 * 230.42839 * 14 13 11 18 18 C 1.34247 * 122.79277 * 89.99965 * 10 9 7 19 19 O 1.21227 * 125.64123 * 359.97438 * 18 10 9 20 20 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.09003 * 110.87920 * 241.88708 * 13 11 10 24 24 H 1.08997 * 110.65015 * 118.75892 * 13 11 10 25 25 H 1.09005 * 113.67104 * 207.59551 * 15 14 13 26 26 H 1.09001 * 113.67070 * 338.66887 * 15 14 13 27 27 H 1.09000 * 113.58261 * 270.02515 * 16 15 14 28 28 H 1.09003 * 113.65238 * 139.24193 * 16 15 14 29 29 H 1.08992 * 113.67209 * 21.32748 * 17 14 13 30 30 H 1.09006 * 113.66504 * 152.30687 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 4.2474 -3.2578 1.1259 12 8 4.1040 -2.8310 2.2515 13 6 4.7329 -4.6488 0.7688 14 6 4.7274 -4.6359 -0.7638 15 6 6.0173 -5.0986 -1.4376 16 6 5.3859 -6.5022 -1.4848 17 6 4.0132 -5.8063 -1.4363 18 6 4.2416 -3.2612 -1.1295 19 8 4.0923 -2.8414 -2.2569 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6801 -0.8911 22 1 3.8751 -0.6805 0.8889 23 1 4.0501 -5.4083 1.1499 24 1 5.7410 -4.8135 1.1490 25 1 6.1793 -4.6584 -2.4215 26 1 6.8945 -5.0349 -0.7938 27 1 5.5998 -7.1065 -0.6033 28 1 5.5723 -7.0344 -2.4176 29 1 3.2912 -6.3073 -0.7915 30 1 3.6081 -5.5653 -2.4192 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307488411.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = -69.545357 kcal Electronic energy + Delta-G solvation = -15492.585596 eV Core-core repulsion = 12866.790539 eV Total energy + Delta-G solvation = -2625.795057 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.09226 -39.84881 -38.87714 -36.82204 -35.07130 -32.48718 -29.40973 -26.76527 -26.74719 -24.76230 -23.53265 -20.77559 -19.95921 -19.40939 -18.04712 -17.40617 -17.36910 -16.60130 -16.09525 -15.73670 -15.21412 -15.09996 -14.68238 -14.39908 -14.09351 -13.91528 -13.40956 -13.14660 -12.65009 -12.40719 -12.34641 -12.26572 -11.91372 -11.64541 -11.34201 -11.23718 -10.96142 -10.74112 -10.55204 -8.47454 -6.56568 0.53119 1.25625 1.28702 1.38617 1.68690 1.90166 2.20883 2.84805 3.09786 3.18576 3.55590 3.58946 3.78357 3.89755 4.43489 4.45676 4.59799 4.63440 4.65813 4.73808 4.85097 4.86157 5.04913 5.17498 5.20372 5.21396 5.52744 5.97880 6.05439 6.42271 6.45750 6.84871 7.08429 8.69303 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.040956 B = 0.008615 C = 0.008134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.499103 B = 3249.386193 C = 3441.350381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.248 1.248 7 C -0.552 4.552 8 H 0.029 0.971 9 C 0.207 3.793 10 N -0.573 5.573 11 C 0.514 3.486 12 O -0.528 6.528 13 C -0.110 4.110 14 C -0.134 4.134 15 C -0.105 4.105 16 C -0.111 4.111 17 C -0.118 4.118 18 C 0.527 3.473 19 O -0.523 6.523 20 H 0.274 0.726 21 H 0.042 0.958 22 H 0.046 0.954 23 H 0.145 0.855 24 H 0.161 0.839 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.675 -13.289 -1.172 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.172 1.172 7 C -0.590 4.590 8 H 0.047 0.953 9 C 0.086 3.914 10 N -0.313 5.313 11 C 0.305 3.695 12 O -0.403 6.403 13 C -0.149 4.149 14 C -0.137 4.137 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.156 4.156 18 C 0.318 3.682 19 O -0.398 6.398 20 H 0.083 0.917 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.163 0.837 24 H 0.178 0.822 25 H 0.099 0.901 26 H 0.125 0.875 27 H 0.134 0.866 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.342 -12.692 -1.172 19.187 hybrid contribution -0.772 1.483 -0.100 1.675 sum 13.571 -11.208 -1.272 17.647 Atomic orbital electron populations 1.70021 1.08112 1.28853 1.50423 1.25860 0.95860 1.03454 0.93077 0.85693 0.79560 0.77951 0.79760 1.18448 1.19251 1.17152 1.21292 0.90569 0.93835 1.53322 0.95272 1.19600 0.94142 0.79365 0.98266 1.47139 1.57567 1.16416 1.10169 1.21874 0.74690 0.89931 0.82987 1.90686 1.51332 1.75548 1.22744 1.22388 1.07828 0.92013 0.92685 1.22432 1.03870 0.90613 0.96827 1.22808 0.93595 0.96971 1.00881 1.22877 0.92061 0.95052 1.04840 1.22843 0.99140 0.92984 1.00628 1.21398 0.74554 0.89076 0.83147 1.90643 1.50988 1.75517 1.22605 0.91717 0.94010 0.93603 0.83741 0.82189 0.90078 0.87513 0.86587 0.89399 0.88977 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.21 13.96 21.45 0.30 -59.91 16 2 C 0.02 1.04 5.47 84.66 0.46 1.50 16 3 Si 0.95 45.49 27.47 68.60 1.88 47.37 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 7 C -0.55 -34.29 9.94 25.60 0.25 -34.03 16 8 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 9 C 0.21 10.88 4.39 85.63 0.38 11.26 16 10 N -0.57 -25.39 2.55 -760.84 -1.94 -27.33 16 11 C 0.51 19.67 8.10 88.06 0.71 20.39 16 12 O -0.53 -24.10 17.48 -2.86 -0.05 -24.15 16 13 C -0.11 -2.44 6.38 30.22 0.19 -2.24 16 14 C -0.13 -3.31 1.16 -53.16 -0.06 -3.37 16 15 C -0.10 -1.75 7.38 30.83 0.23 -1.52 16 16 C -0.11 -1.33 7.95 31.24 0.25 -1.08 16 17 C -0.12 -2.39 7.38 30.83 0.23 -2.16 16 18 C 0.53 20.83 7.34 87.62 0.64 21.47 16 19 O -0.52 -24.41 17.51 -2.87 -0.05 -24.47 16 20 H 0.27 16.18 8.31 -92.70 -0.77 15.41 16 21 H 0.04 2.17 7.28 -2.39 -0.02 2.15 16 22 H 0.05 2.39 6.88 -2.39 -0.02 2.38 16 23 H 0.14 2.49 7.80 -2.39 -0.02 2.47 16 24 H 0.16 2.16 7.80 -2.39 -0.02 2.14 16 25 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.11 1.21 7.90 -2.39 -0.02 1.19 16 27 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 1.62 7.90 -2.39 -0.02 1.60 16 30 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -81.63 259.70 4.51 -77.12 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: 1.08 Total: 1.15 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 3.28 Total: 10.21 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.64 Total: -87.24 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: -0.10 Total: -48.62 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -81.63 4.51 -77.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307488411.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.575 kcal (2) G-P(sol) polarization free energy of solvation -81.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds