Wall clock time and date at job start Mon Mar 30 2020 02:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76194 * 102.99911 * 2 1 4 4 C 1.38948 * 120.00675 * 359.72519 * 3 2 1 5 5 C 1.38049 * 119.99191 * 179.72610 * 4 3 2 6 6 C 1.38887 * 120.00944 * 0.52497 * 5 4 3 7 7 N 1.40006 * 119.99741 * 179.74834 * 6 5 4 8 8 C 1.38857 * 120.01185 * 359.77125 * 6 5 4 9 9 C 1.38095 * 120.00072 * 359.95532 * 8 6 5 10 10 C 1.50703 * 120.00127 * 179.97438 * 9 8 6 11 11 C 1.50692 * 109.47185 * 265.02211 * 10 9 8 12 12 H 1.08003 * 120.00277 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00181 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00701 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99921 * 359.97438 * 13 11 10 16 16 H 1.48508 * 109.46992 * 89.99986 * 15 13 11 17 17 H 1.48499 * 109.47252 * 210.00049 * 15 13 11 18 18 H 1.48497 * 109.46873 * 330.00403 * 15 13 11 19 19 H 1.09001 * 109.47190 * 59.99990 * 1 2 3 20 20 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47568 * 300.00134 * 1 2 3 22 22 H 1.08000 * 119.99786 * 359.97355 * 4 3 2 23 23 H 1.08007 * 119.99558 * 180.27988 * 5 4 3 24 24 H 0.96998 * 119.99865 * 180.02562 * 7 6 5 25 25 H 0.97000 * 119.99500 * 0.02709 * 7 6 5 26 26 H 1.07994 * 119.99741 * 179.97438 * 8 6 5 27 27 H 1.09003 * 109.46993 * 25.02149 * 10 9 8 28 28 H 1.09005 * 109.46960 * 145.02109 * 10 9 8 29 29 H 0.96998 * 120.00501 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1942 2.6645 -0.0058 5 6 1.5051 4.0095 -0.0001 6 6 2.8333 4.4155 0.0004 7 7 3.1482 5.7797 0.0009 8 6 3.8489 3.4687 0.0000 9 6 3.5385 2.1231 0.0000 10 6 4.6409 1.0955 -0.0011 11 6 4.9231 0.6630 -1.4168 12 1 4.3608 1.0899 -2.2341 13 6 5.8999 -0.2769 -1.6688 14 7 6.1466 -0.6540 -2.9043 15 14 6.8739 -1.0137 -0.2553 16 1 6.1815 -2.2297 0.2421 17 1 8.2341 -1.3769 -0.7278 18 1 6.9803 -0.0204 0.8433 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 0.1614 2.3488 -0.0107 23 1 0.7153 4.7463 0.0000 24 1 4.0758 6.0633 0.0009 25 1 2.4388 6.4412 0.0013 26 1 4.8816 3.7846 0.0000 27 1 5.5420 1.5288 0.4330 28 1 4.3329 0.2317 0.5882 29 1 6.8341 -1.3149 -3.0816 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307503656.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:32 Heat of formation + Delta-G solvation = 16.534899 kcal Electronic energy + Delta-G solvation = -12796.039707 eV Core-core repulsion = 10616.730241 eV Total energy + Delta-G solvation = -2179.309466 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.81835 -34.54929 -33.01506 -31.39621 -28.98307 -28.13372 -27.28478 -23.02689 -21.88482 -20.24673 -16.87522 -16.68873 -16.46804 -16.05666 -14.39091 -14.15872 -13.87995 -13.76150 -13.41003 -12.87807 -12.64892 -12.31668 -12.05767 -11.54518 -11.46333 -10.92872 -10.59239 -10.49579 -10.00894 -9.89973 -9.41517 -9.20972 -8.48452 -8.10585 -7.92703 -6.29938 -5.97424 -3.94628 1.97013 2.09418 2.27034 3.20168 3.36475 3.43000 3.45876 4.18137 4.38974 4.50369 5.30141 5.38108 5.39261 5.41863 5.46517 5.86399 5.95640 6.07543 6.20950 6.57564 6.72052 6.77770 6.86758 7.07347 7.29092 7.56442 7.75348 7.86631 8.05118 8.58752 9.08285 9.62923 11.15776 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.010703 C = 0.008139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.649204 B = 2615.353719 C = 3439.343792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 S -0.083 6.083 3 C -0.140 4.140 4 C -0.089 4.089 5 C -0.203 4.203 6 C 0.206 3.794 7 N -0.885 5.885 8 C -0.182 4.182 9 C 0.034 3.966 10 C 0.012 3.988 11 C -0.499 4.499 12 H 0.074 0.926 13 C 0.072 3.928 14 N -0.901 5.901 15 Si 0.871 3.129 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.266 1.266 19 H 0.075 0.925 20 H 0.098 0.902 21 H 0.071 0.929 22 H 0.114 0.886 23 H 0.112 0.888 24 H 0.395 0.605 25 H 0.391 0.609 26 H 0.121 0.879 27 H 0.029 0.971 28 H 0.032 0.968 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.197 7.780 7.453 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 S 0.158 5.842 3 C -0.253 4.253 4 C -0.113 4.113 5 C -0.228 4.228 6 C 0.102 3.898 7 N -0.425 5.425 8 C -0.206 4.206 9 C 0.029 3.971 10 C -0.026 4.026 11 C -0.537 4.537 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.540 5.540 15 Si 0.699 3.301 16 H -0.200 1.200 17 H -0.214 1.214 18 H -0.190 1.190 19 H 0.094 0.906 20 H 0.116 0.884 21 H 0.090 0.910 22 H 0.132 0.868 23 H 0.130 0.870 24 H 0.223 0.777 25 H 0.219 0.781 26 H 0.139 0.861 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.461 6.535 7.341 12.969 hybrid contribution -0.237 1.125 0.509 1.257 sum -8.698 7.659 7.850 13.998 Atomic orbital electron populations 1.23695 0.99132 1.05918 1.04405 1.86018 1.01294 1.03793 1.93057 1.21292 0.95948 0.96086 1.12021 1.20752 0.97438 0.92466 1.00690 1.20185 0.93954 0.95442 1.13173 1.17769 0.93280 0.84173 0.94620 1.42434 1.09886 1.03549 1.86670 1.20429 0.97863 0.91711 1.10582 1.19707 0.92988 0.94188 0.90259 1.18863 0.91785 0.92757 0.99169 1.20764 1.19388 1.23118 0.90394 0.90741 1.24911 0.96672 0.96037 0.95290 1.69892 1.32999 1.32249 1.18827 0.86898 0.79635 0.80266 0.83349 1.19957 1.21371 1.19034 0.90582 0.88375 0.90952 0.86771 0.87032 0.77741 0.78139 0.86100 0.95330 0.94993 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.15 101.05 0.92 -1.33 15 2 S -0.08 -1.63 20.84 -107.50 -2.24 -3.87 15 3 C -0.14 -2.85 6.11 -39.07 -0.24 -3.09 15 4 C -0.09 -1.54 9.36 -39.39 -0.37 -1.90 15 5 C -0.20 -3.25 9.89 -39.41 -0.39 -3.64 15 6 C 0.21 3.41 6.76 -83.65 -0.57 2.84 15 7 N -0.89 -10.82 9.10 32.46 0.30 -10.53 15 8 C -0.18 -3.55 9.52 -39.40 -0.38 -3.92 15 9 C 0.03 0.75 5.09 -104.43 -0.53 0.22 15 10 C 0.01 0.29 3.63 -29.04 -0.11 0.19 15 11 C -0.50 -14.39 9.63 -34.44 -0.33 -14.73 15 12 H 0.07 2.38 7.98 -52.48 -0.42 1.96 15 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 15 14 N -0.90 -28.00 13.96 55.43 0.77 -27.23 15 15 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 15 16 H -0.27 -6.79 7.11 56.52 0.40 -6.39 15 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 18 H -0.27 -6.38 6.54 56.52 0.37 -6.02 15 19 H 0.08 1.00 7.73 -51.92 -0.40 0.60 15 20 H 0.10 1.17 8.14 -51.92 -0.42 0.75 15 21 H 0.07 0.88 7.76 -51.92 -0.40 0.48 15 22 H 0.11 1.67 5.87 -52.49 -0.31 1.36 15 23 H 0.11 1.45 8.06 -52.48 -0.42 1.03 15 24 H 0.39 4.25 8.84 -40.82 -0.36 3.89 15 25 H 0.39 3.78 8.84 -40.82 -0.36 3.42 15 26 H 0.12 2.24 8.06 -52.49 -0.42 1.82 15 27 H 0.03 0.70 7.11 -51.93 -0.37 0.33 15 28 H 0.03 0.80 6.43 -51.93 -0.33 0.47 15 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 LS Contribution 259.85 15.07 3.92 3.92 Total: -1.00 -32.17 259.85 -7.39 -39.56 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -3.39 Total: 4.28 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -2.08 Total: -23.34 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 1.07 Total: -37.76 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.24 Total: -3.87 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.17 -7.39 -39.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307503656.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.100 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds