Wall clock time and date at job start Mon Mar 30 2020 02:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76194 * 102.99911 * 2 1 4 4 C 1.38948 * 120.00675 * 359.72519 * 3 2 1 5 5 C 1.38049 * 119.99191 * 179.72610 * 4 3 2 6 6 C 1.38887 * 120.00944 * 0.52497 * 5 4 3 7 7 N 1.40006 * 119.99741 * 179.74834 * 6 5 4 8 8 C 1.38857 * 120.01185 * 359.77125 * 6 5 4 9 9 C 1.38095 * 120.00072 * 359.95532 * 8 6 5 10 10 C 1.50703 * 120.00127 * 179.97438 * 9 8 6 11 11 C 1.50692 * 109.47185 * 265.02211 * 10 9 8 12 12 H 1.08003 * 120.00277 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00181 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00701 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99921 * 359.97438 * 13 11 10 16 16 H 1.48508 * 109.46992 * 89.99986 * 15 13 11 17 17 H 1.48499 * 109.47252 * 210.00049 * 15 13 11 18 18 H 1.48497 * 109.46873 * 330.00403 * 15 13 11 19 19 H 1.09001 * 109.47190 * 59.99990 * 1 2 3 20 20 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47568 * 300.00134 * 1 2 3 22 22 H 1.08000 * 119.99786 * 359.97355 * 4 3 2 23 23 H 1.08007 * 119.99558 * 180.27988 * 5 4 3 24 24 H 0.96998 * 119.99865 * 180.02562 * 7 6 5 25 25 H 0.97000 * 119.99500 * 0.02709 * 7 6 5 26 26 H 1.07994 * 119.99741 * 179.97438 * 8 6 5 27 27 H 1.09003 * 109.46993 * 25.02149 * 10 9 8 28 28 H 1.09005 * 109.46960 * 145.02109 * 10 9 8 29 29 H 0.96998 * 120.00501 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1942 2.6645 -0.0058 5 6 1.5051 4.0095 -0.0001 6 6 2.8333 4.4155 0.0004 7 7 3.1482 5.7797 0.0009 8 6 3.8489 3.4687 0.0000 9 6 3.5385 2.1231 0.0000 10 6 4.6409 1.0955 -0.0011 11 6 4.9231 0.6630 -1.4168 12 1 4.3608 1.0899 -2.2341 13 6 5.8999 -0.2769 -1.6688 14 7 6.1466 -0.6540 -2.9043 15 14 6.8739 -1.0137 -0.2553 16 1 6.1815 -2.2297 0.2421 17 1 8.2341 -1.3769 -0.7278 18 1 6.9803 -0.0204 0.8433 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 0.1614 2.3488 -0.0107 23 1 0.7153 4.7463 0.0000 24 1 4.0758 6.0633 0.0009 25 1 2.4388 6.4412 0.0013 26 1 4.8816 3.7846 0.0000 27 1 5.5420 1.5288 0.4330 28 1 4.3329 0.2317 0.5882 29 1 6.8341 -1.3149 -3.0816 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307503656.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:32 Heat of formation + Delta-G solvation = -5.223840 kcal Electronic energy + Delta-G solvation = -12796.983237 eV Core-core repulsion = 10616.730241 eV Total energy + Delta-G solvation = -2180.252996 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.20753 -36.04476 -34.81598 -33.19448 -30.28822 -29.53033 -28.85713 -24.92502 -23.25600 -21.84945 -18.93300 -18.26636 -17.67114 -17.41380 -16.22658 -15.75833 -15.28280 -15.07295 -14.78532 -14.60273 -14.08723 -13.79602 -13.56782 -13.32265 -13.00163 -12.50399 -12.35778 -12.12665 -11.73803 -11.63488 -11.47445 -10.78813 -10.67593 -9.57145 -9.28213 -8.24576 -7.70244 -6.26266 0.57646 0.65746 0.93007 1.36243 1.37819 1.48551 1.88034 2.37953 2.95570 3.08367 3.11947 4.01333 4.13600 4.37071 4.38759 4.46366 4.68379 4.76848 4.90439 5.01347 5.11272 5.21772 5.40354 5.42721 5.60139 5.83074 5.99942 6.31627 6.65683 6.76139 7.11857 7.34525 8.92450 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.010703 C = 0.008139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.649204 B = 2615.353719 C = 3439.343792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.172 6.172 3 C -0.155 4.155 4 C -0.085 4.085 5 C -0.196 4.196 6 C 0.214 3.786 7 N -0.866 5.866 8 C -0.202 4.202 9 C -0.006 4.006 10 C 0.022 3.978 11 C -0.495 4.495 12 H 0.026 0.974 13 C 0.012 3.988 14 N -0.949 5.949 15 Si 0.940 3.060 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.249 1.249 19 H 0.085 0.915 20 H 0.117 0.883 21 H 0.094 0.906 22 H 0.144 0.856 23 H 0.152 0.848 24 H 0.404 0.596 25 H 0.409 0.591 26 H 0.119 0.881 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 9.337 9.061 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.068 5.932 3 C -0.269 4.269 4 C -0.109 4.109 5 C -0.220 4.220 6 C 0.107 3.893 7 N -0.408 5.408 8 C -0.226 4.226 9 C -0.011 4.011 10 C -0.016 4.016 11 C -0.533 4.533 12 H 0.044 0.956 13 C -0.184 4.184 14 N -0.590 5.590 15 Si 0.763 3.237 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.172 1.172 19 H 0.104 0.896 20 H 0.136 0.864 21 H 0.113 0.887 22 H 0.162 0.838 23 H 0.170 0.830 24 H 0.233 0.767 25 H 0.239 0.761 26 H 0.137 0.863 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.089 8.156 8.962 15.768 hybrid contribution 0.119 0.782 -0.053 0.792 sum -9.971 8.938 8.909 16.083 Atomic orbital electron populations 1.23704 0.93203 1.07737 1.05881 1.86131 1.07976 1.05524 1.93523 1.21333 0.96052 0.96153 1.13373 1.21131 0.98120 0.92515 0.99170 1.20652 0.94616 0.95783 1.10975 1.17811 0.92998 0.85393 0.93134 1.42376 1.11230 1.02147 1.85001 1.20488 0.98835 0.91564 1.11762 1.19609 0.93171 0.94613 0.93711 1.18625 0.93069 0.93686 0.96179 1.20870 1.18416 1.22622 0.91428 0.95560 1.25815 0.97956 0.96564 0.98078 1.70043 1.34219 1.33438 1.21289 0.85811 0.78024 0.79723 0.80134 1.19271 1.20552 1.17222 0.89642 0.86433 0.88698 0.83816 0.83008 0.76738 0.76106 0.86263 0.95380 0.95398 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.15 113.37 1.04 -2.42 15 2 S -0.17 -6.83 20.84 -56.49 -1.18 -8.01 15 3 C -0.16 -6.30 6.11 22.60 0.14 -6.16 15 4 C -0.09 -2.72 9.36 22.40 0.21 -2.51 15 5 C -0.20 -5.55 9.89 22.38 0.22 -5.32 15 6 C 0.21 6.54 6.76 38.14 0.26 6.80 15 7 N -0.87 -18.26 9.10 -51.21 -0.47 -18.73 15 8 C -0.20 -7.84 9.52 22.38 0.21 -7.63 15 9 C -0.01 -0.25 5.09 -19.74 -0.10 -0.35 15 10 C 0.02 1.12 3.63 29.10 0.11 1.23 15 11 C -0.50 -29.92 9.63 25.60 0.25 -29.67 15 12 H 0.03 1.78 7.98 -2.91 -0.02 1.76 15 13 C 0.01 0.76 5.47 84.65 0.46 1.22 15 14 N -0.95 -61.24 13.96 21.45 0.30 -60.94 15 15 Si 0.94 46.01 27.47 68.60 1.88 47.90 15 16 H -0.27 -12.75 7.11 99.48 0.71 -12.04 15 17 H -0.28 -13.25 7.11 99.48 0.71 -12.54 15 18 H -0.25 -11.37 6.54 99.48 0.65 -10.72 15 19 H 0.08 2.01 7.73 -2.39 -0.02 1.99 15 20 H 0.12 2.51 8.14 -2.39 -0.02 2.49 15 21 H 0.09 1.98 7.76 -2.39 -0.02 1.96 15 22 H 0.14 3.63 5.87 -2.91 -0.02 3.61 15 23 H 0.15 3.07 8.06 -2.91 -0.02 3.05 15 24 H 0.40 7.54 8.84 -92.71 -0.82 6.72 15 25 H 0.41 6.10 8.84 -92.71 -0.82 5.28 15 26 H 0.12 4.47 8.06 -2.91 -0.02 4.44 15 27 H 0.03 1.40 7.11 -2.39 -0.02 1.38 15 28 H 0.03 1.44 6.43 -2.38 -0.02 1.42 15 29 H 0.27 15.97 8.31 -92.71 -0.77 15.20 15 Total: -1.00 -73.42 259.85 2.81 -70.61 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -0.52 Total: 13.99 kcal Atomic # 6 Polarization: -47.62 SS G_CDS: 2.79 Total: -44.83 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -0.17 Total: -79.67 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.90 kcal Atomic # 16 Polarization: -6.83 SS G_CDS: -1.18 Total: -8.01 kcal Total: -73.42 2.81 -70.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307503656.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.388 kcal (2) G-P(sol) polarization free energy of solvation -73.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds