Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76206 * 102.99884 * 2 1 4 4 C 1.38781 * 120.11771 * 0.24814 * 3 2 1 5 5 C 1.38203 * 120.00295 * 180.29891 * 4 3 2 6 6 C 1.38385 * 120.25505 * 359.73037 * 5 4 3 7 7 C 1.38144 * 120.24085 * 359.97438 * 6 5 4 8 8 C 1.38917 * 119.99243 * 0.02562 * 7 6 5 9 9 N 1.39341 * 120.12506 * 180.02562 * 8 7 6 10 10 C 1.46503 * 119.99860 * 269.99846 * 9 8 7 11 11 C 1.36809 * 120.00193 * 90.00404 * 9 8 7 12 12 H 1.08007 * 119.99837 * 339.37894 * 11 9 8 13 13 C 1.38737 * 120.00489 * 159.38366 * 11 9 8 14 14 N 1.31635 * 119.99561 * 347.61306 * 13 11 9 15 15 Si 1.86791 * 120.00400 * 167.89237 * 13 11 9 16 16 H 1.48501 * 109.47090 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47317 * 119.99945 * 15 13 11 18 18 H 1.48499 * 109.47068 * 240.00074 * 15 13 11 19 19 H 1.09000 * 109.47462 * 299.99696 * 1 2 3 20 20 H 1.08994 * 109.47417 * 60.00531 * 1 2 3 21 21 H 1.09001 * 109.47019 * 180.02562 * 1 2 3 22 22 H 1.07997 * 120.00365 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.87001 * 179.74695 * 5 4 3 24 24 H 1.07995 * 119.87899 * 180.02562 * 6 5 4 25 25 H 1.08005 * 120.00253 * 180.02562 * 7 6 5 26 26 H 1.09005 * 109.47066 * 264.90169 * 10 9 8 27 27 H 1.08997 * 109.47051 * 24.89811 * 10 9 8 28 28 H 1.08997 * 109.46785 * 144.90073 * 10 9 8 29 29 H 0.97001 * 120.00401 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1973 2.6655 0.0052 5 6 1.5108 4.0114 -0.0011 6 6 2.8332 4.4193 -0.0069 7 6 3.8498 3.4840 -0.0060 8 6 3.5462 2.1284 0.0003 9 7 4.5694 1.1826 0.0018 10 6 5.1043 0.6801 -1.2662 11 6 5.0745 0.7230 1.1873 12 1 4.9417 1.2999 2.0907 13 6 5.7573 -0.4840 1.2292 14 7 5.7129 -1.3013 0.1982 15 14 6.7331 -0.9528 2.7513 16 1 6.6189 0.1269 3.7645 17 1 6.1964 -2.2183 3.3132 18 1 8.1604 -1.1394 2.3863 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 0.1639 2.3519 0.0097 23 1 0.7207 4.7477 -0.0011 24 1 3.0713 5.4727 -0.0113 25 1 4.8805 3.8066 -0.0101 26 1 4.6003 -0.2497 -1.5302 27 1 4.9367 1.4193 -2.0495 28 1 6.1737 0.4969 -1.1622 29 1 6.1905 -2.1450 0.2272 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307509487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = 54.644783 kcal Electronic energy + Delta-G solvation = -13167.212263 eV Core-core repulsion = 10989.555365 eV Total energy + Delta-G solvation = -2177.656898 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.51365 -35.24316 -31.46211 -30.65011 -28.54956 -28.32715 -25.86526 -23.33666 -22.03619 -20.44219 -17.26121 -16.58241 -15.59205 -14.95663 -14.39727 -13.92264 -13.54809 -13.47341 -13.24807 -13.01025 -12.05911 -11.96247 -11.83612 -11.42706 -10.90993 -10.82413 -10.58602 -10.47532 -10.05798 -9.90455 -9.27284 -9.05698 -8.56734 -8.04957 -6.94077 -6.51375 -5.72493 -3.21838 1.89969 2.05343 2.29540 3.26331 3.39614 3.46708 3.49211 4.35848 4.51715 5.31478 5.40814 5.41462 5.42830 5.45377 5.61185 5.86802 5.95117 6.10815 6.39359 6.53477 6.76546 6.82598 7.03705 7.23719 7.42010 7.53742 7.79488 7.85027 8.44033 9.21883 9.90411 10.29419 11.32129 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.028148 B = 0.011083 C = 0.009286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.505973 B = 2525.849400 C = 3014.433229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 S -0.038 6.038 3 C -0.110 4.110 4 C -0.139 4.139 5 C -0.131 4.131 6 C -0.127 4.127 7 C -0.123 4.123 8 C 0.229 3.771 9 N -0.566 5.566 10 C 0.167 3.833 11 C -0.254 4.254 12 H 0.070 0.930 13 C 0.011 3.989 14 N -0.899 5.899 15 Si 0.906 3.094 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.289 1.289 19 H 0.073 0.927 20 H 0.071 0.929 21 H 0.097 0.903 22 H 0.111 0.889 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.121 0.879 26 H 0.040 0.960 27 H -0.003 1.003 28 H 0.050 0.950 29 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 6.163 -1.619 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.346 4.346 2 S 0.206 5.794 3 C -0.226 4.226 4 C -0.164 4.164 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.146 4.146 8 C 0.129 3.871 9 N -0.285 5.285 10 C 0.024 3.976 11 C -0.382 4.382 12 H 0.088 0.912 13 C -0.188 4.188 14 N -0.543 5.543 15 Si 0.736 3.264 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.216 1.216 19 H 0.092 0.908 20 H 0.091 0.909 21 H 0.116 0.884 22 H 0.129 0.871 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.139 0.861 26 H 0.058 0.942 27 H 0.016 0.984 28 H 0.068 0.932 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.274 4.845 -1.653 8.894 hybrid contribution -0.397 0.819 0.861 1.253 sum -7.670 5.664 -0.792 9.568 Atomic orbital electron populations 1.23794 1.00667 1.05849 1.04263 1.86701 0.98918 1.02294 1.91531 1.23119 0.97358 0.97000 1.05128 1.20965 0.97386 0.93267 1.04819 1.20776 0.96176 0.94866 1.03265 1.20932 0.92784 0.98668 1.02506 1.21704 0.99099 0.92900 1.00874 1.17393 0.86573 0.89793 0.93356 1.41457 1.36633 1.46096 1.04310 1.20879 0.98754 0.94986 0.83009 1.19086 1.30364 1.01804 0.86902 0.91229 1.24943 1.01050 0.95257 0.97502 1.70114 1.44331 1.09868 1.29978 0.86163 0.79598 0.78169 0.82492 1.20314 1.21574 1.21574 0.90845 0.90950 0.88406 0.87076 0.87039 0.86958 0.86122 0.94154 0.98421 0.93150 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 9.15 101.05 0.92 -1.67 15 2 S -0.04 -0.80 21.99 -107.50 -2.36 -3.16 15 3 C -0.11 -2.32 6.13 -38.80 -0.24 -2.56 15 4 C -0.14 -2.45 9.36 -39.39 -0.37 -2.82 15 5 C -0.13 -2.09 10.04 -39.54 -0.40 -2.49 15 6 C -0.13 -2.11 10.04 -39.56 -0.40 -2.51 15 7 C -0.12 -2.45 9.97 -39.36 -0.39 -2.84 15 8 C 0.23 5.24 5.02 -83.62 -0.42 4.82 15 9 N -0.57 -14.57 2.25 -120.35 -0.27 -14.84 15 10 C 0.17 4.22 8.95 59.85 0.54 4.75 15 11 C -0.25 -7.04 9.66 -15.15 -0.15 -7.19 15 12 H 0.07 1.95 7.86 -52.48 -0.41 1.54 15 13 C 0.01 0.32 5.12 -17.45 -0.09 0.23 15 14 N -0.90 -25.81 10.53 55.49 0.58 -25.23 15 15 Si 0.91 22.00 29.57 -169.99 -5.03 16.98 15 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 17 H -0.29 -7.08 7.11 56.52 0.40 -6.67 15 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 19 H 0.07 1.00 7.74 -51.92 -0.40 0.60 15 20 H 0.07 0.96 7.76 -51.93 -0.40 0.56 15 21 H 0.10 1.26 8.14 -51.92 -0.42 0.84 15 22 H 0.11 1.68 5.88 -52.49 -0.31 1.37 15 23 H 0.11 1.42 8.06 -52.49 -0.42 1.00 15 24 H 0.11 1.51 8.06 -52.49 -0.42 1.09 15 25 H 0.12 2.32 8.06 -52.48 -0.42 1.89 15 26 H 0.04 1.09 7.40 -51.93 -0.38 0.71 15 27 H 0.00 -0.06 8.01 -51.93 -0.42 -0.48 15 28 H 0.05 1.34 7.15 -51.93 -0.37 0.96 15 29 H 0.25 7.03 8.31 -40.82 -0.34 6.69 15 LS Contribution 261.51 15.07 3.94 3.94 Total: -1.00 -29.67 261.51 -7.65 -37.32 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -3.52 Total: -2.75 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.99 Total: -12.26 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.31 Total: -40.06 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.36 Total: -3.16 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.67 -7.65 -37.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.960 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds