Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76206 * 102.99884 * 2 1 4 4 C 1.38781 * 120.11771 * 0.24814 * 3 2 1 5 5 C 1.38203 * 120.00295 * 180.29891 * 4 3 2 6 6 C 1.38385 * 120.25505 * 359.73037 * 5 4 3 7 7 C 1.38144 * 120.24085 * 359.97438 * 6 5 4 8 8 C 1.38917 * 119.99243 * 0.02562 * 7 6 5 9 9 N 1.39341 * 120.12506 * 180.02562 * 8 7 6 10 10 C 1.46503 * 119.99860 * 269.99846 * 9 8 7 11 11 C 1.36809 * 120.00193 * 90.00404 * 9 8 7 12 12 H 1.08007 * 119.99837 * 339.37894 * 11 9 8 13 13 C 1.38737 * 120.00489 * 159.38366 * 11 9 8 14 14 N 1.31635 * 119.99561 * 347.61306 * 13 11 9 15 15 Si 1.86791 * 120.00400 * 167.89237 * 13 11 9 16 16 H 1.48501 * 109.47090 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47317 * 119.99945 * 15 13 11 18 18 H 1.48499 * 109.47068 * 240.00074 * 15 13 11 19 19 H 1.09000 * 109.47462 * 299.99696 * 1 2 3 20 20 H 1.08994 * 109.47417 * 60.00531 * 1 2 3 21 21 H 1.09001 * 109.47019 * 180.02562 * 1 2 3 22 22 H 1.07997 * 120.00365 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.87001 * 179.74695 * 5 4 3 24 24 H 1.07995 * 119.87899 * 180.02562 * 6 5 4 25 25 H 1.08005 * 120.00253 * 180.02562 * 7 6 5 26 26 H 1.09005 * 109.47066 * 264.90169 * 10 9 8 27 27 H 1.08997 * 109.47051 * 24.89811 * 10 9 8 28 28 H 1.08997 * 109.46785 * 144.90073 * 10 9 8 29 29 H 0.97001 * 120.00401 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1973 2.6655 0.0052 5 6 1.5108 4.0114 -0.0011 6 6 2.8332 4.4193 -0.0069 7 6 3.8498 3.4840 -0.0060 8 6 3.5462 2.1284 0.0003 9 7 4.5694 1.1826 0.0018 10 6 5.1043 0.6801 -1.2662 11 6 5.0745 0.7230 1.1873 12 1 4.9417 1.2999 2.0907 13 6 5.7573 -0.4840 1.2292 14 7 5.7129 -1.3013 0.1982 15 14 6.7331 -0.9528 2.7513 16 1 6.6189 0.1269 3.7645 17 1 6.1964 -2.2183 3.3132 18 1 8.1604 -1.1394 2.3863 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 0.1639 2.3519 0.0097 23 1 0.7207 4.7477 -0.0011 24 1 3.0713 5.4727 -0.0113 25 1 4.8805 3.8066 -0.0101 26 1 4.6003 -0.2497 -1.5302 27 1 4.9367 1.4193 -2.0495 28 1 6.1737 0.4969 -1.1622 29 1 6.1905 -2.1450 0.2272 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307509487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = 38.506299 kcal Electronic energy + Delta-G solvation = -13167.912080 eV Core-core repulsion = 10989.555365 eV Total energy + Delta-G solvation = -2178.356715 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03267 -37.06097 -33.41113 -32.04823 -30.21780 -29.54181 -27.94690 -25.16786 -23.45784 -22.10040 -19.06098 -18.27839 -17.33496 -16.57230 -16.00304 -15.59947 -15.27450 -14.87156 -14.63818 -14.47066 -13.92998 -13.41795 -13.22416 -13.03650 -12.87688 -12.65775 -12.37323 -12.11174 -12.00870 -11.86545 -10.78660 -10.63496 -10.45520 -9.53230 -8.94992 -8.10023 -7.81954 -5.33200 0.47035 0.59613 0.87589 1.45381 1.46211 1.56654 1.87846 2.50091 2.93521 3.33759 3.61033 4.10877 4.29072 4.32043 4.33850 4.57482 4.65468 4.73905 4.85799 4.92530 5.13707 5.25215 5.42929 5.60512 5.65654 5.69210 5.90029 6.09912 6.39882 7.13720 7.90925 8.28837 9.21331 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.028148 B = 0.011083 C = 0.009286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.505973 B = 2525.849400 C = 3014.433229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.140 6.140 3 C -0.119 4.119 4 C -0.137 4.137 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.136 4.136 8 C 0.178 3.822 9 N -0.573 5.573 10 C 0.187 3.813 11 C -0.257 4.257 12 H 0.060 0.940 13 C -0.038 4.038 14 N -0.926 5.926 15 Si 0.966 3.034 16 H -0.271 1.271 17 H -0.291 1.291 18 H -0.287 1.287 19 H 0.088 0.912 20 H 0.091 0.909 21 H 0.114 0.886 22 H 0.140 0.860 23 H 0.159 0.841 24 H 0.152 0.848 25 H 0.116 0.884 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.026 0.974 29 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.144 8.374 -1.152 13.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.103 5.897 3 C -0.235 4.235 4 C -0.162 4.162 5 C -0.135 4.135 6 C -0.138 4.138 7 C -0.158 4.158 8 C 0.079 3.921 9 N -0.293 5.293 10 C 0.043 3.957 11 C -0.386 4.386 12 H 0.077 0.923 13 C -0.234 4.234 14 N -0.571 5.571 15 Si 0.794 3.206 16 H -0.196 1.196 17 H -0.218 1.218 18 H -0.213 1.213 19 H 0.107 0.893 20 H 0.110 0.890 21 H 0.133 0.867 22 H 0.158 0.842 23 H 0.176 0.824 24 H 0.169 0.831 25 H 0.134 0.866 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.397 7.099 -1.183 11.836 hybrid contribution 0.098 0.270 0.685 0.742 sum -9.299 7.369 -0.498 11.875 Atomic orbital electron populations 1.23761 0.94492 1.07542 1.05840 1.86907 1.05961 1.04693 1.92117 1.23001 0.97448 0.96720 1.06302 1.21360 0.97918 0.93460 1.03435 1.21331 0.97088 0.94976 1.00099 1.21343 0.92289 0.99907 1.00246 1.21758 1.00131 0.92333 1.01532 1.17766 0.86807 0.90261 0.97248 1.41396 1.37865 1.46649 1.03371 1.20530 0.96805 0.94430 0.83960 1.19184 1.30345 1.01602 0.87437 0.92253 1.25624 1.02286 0.95318 1.00145 1.70268 1.45228 1.10008 1.31610 0.85227 0.78139 0.77615 0.79578 1.19587 1.21807 1.21327 0.89322 0.89029 0.86720 0.84230 0.82383 0.83055 0.86577 0.96810 0.96522 0.95473 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.15 113.37 1.04 -2.92 15 2 S -0.14 -5.91 21.99 -56.49 -1.24 -7.15 15 3 C -0.12 -4.94 6.13 22.77 0.14 -4.80 15 4 C -0.14 -4.34 9.36 22.39 0.21 -4.13 15 5 C -0.12 -3.10 10.04 22.30 0.22 -2.87 15 6 C -0.12 -3.41 10.04 22.28 0.22 -3.19 15 7 C -0.14 -5.23 9.97 22.41 0.22 -5.00 15 8 C 0.18 8.19 5.02 38.48 0.19 8.38 15 9 N -0.57 -30.49 2.25 -534.67 -1.20 -31.69 15 10 C 0.19 9.87 8.95 127.77 1.14 11.02 15 11 C -0.26 -14.73 9.66 84.04 0.81 -13.92 15 12 H 0.06 3.44 7.86 -2.91 -0.02 3.42 15 13 C -0.04 -2.16 5.12 84.84 0.43 -1.73 15 14 N -0.93 -55.35 10.53 21.64 0.23 -55.12 15 15 Si 0.97 46.38 29.57 68.60 2.03 48.41 15 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 17 H -0.29 -13.97 7.11 99.48 0.71 -13.26 15 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 15 19 H 0.09 2.11 7.74 -2.39 -0.02 2.09 15 20 H 0.09 2.11 7.76 -2.39 -0.02 2.09 15 21 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15 22 H 0.14 3.56 5.88 -2.91 -0.02 3.54 15 23 H 0.16 2.86 8.06 -2.91 -0.02 2.83 15 24 H 0.15 3.24 8.06 -2.91 -0.02 3.22 15 25 H 0.12 4.44 8.06 -2.91 -0.02 4.42 15 26 H 0.01 0.78 7.40 -2.38 -0.02 0.76 15 27 H 0.02 0.78 8.01 -2.39 -0.02 0.76 15 28 H 0.03 1.50 7.15 -2.39 -0.02 1.48 15 29 H 0.25 14.40 8.31 -92.71 -0.77 13.63 15 Total: -1.00 -67.34 261.51 5.58 -61.75 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: 1.13 Total: 2.98 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 4.64 Total: -19.17 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -0.97 Total: -86.82 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -1.24 Total: -7.15 kcal Total: -67.34 5.58 -61.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.260 kcal (2) G-P(sol) polarization free energy of solvation -67.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds