Wall clock time and date at job start Mon Mar 30 2020 02:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76209 * 102.99792 * 2 1 4 4 C 1.38724 * 120.10099 * 359.72652 * 3 2 1 5 5 C 1.38244 * 119.99487 * 180.25323 * 4 3 2 6 6 C 1.38274 * 120.19629 * 0.02562 * 5 4 3 7 7 C 1.38286 * 120.20077 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99404 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.46795 * 264.97483 * 8 7 6 10 10 H 1.08005 * 120.00262 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99983 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99679 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00039 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47420 * 60.00043 * 13 11 9 15 15 H 1.48504 * 109.47327 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47577 * 299.99956 * 13 11 9 17 17 C 1.38638 * 120.00701 * 359.97438 * 7 6 5 18 18 N 1.40005 * 120.09977 * 180.02562 * 17 7 6 19 19 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46746 * 299.99486 * 1 2 3 21 21 H 1.09001 * 109.47174 * 60.00011 * 1 2 3 22 22 H 1.08007 * 120.00271 * 0.24912 * 4 3 2 23 23 H 1.07999 * 119.90250 * 180.02562 * 5 4 3 24 24 H 1.07995 * 119.89897 * 180.02562 * 6 5 4 25 25 H 1.08998 * 109.46994 * 24.97696 * 8 7 6 26 26 H 1.09003 * 109.46670 * 144.97526 * 8 7 6 27 27 H 0.97007 * 119.99839 * 179.97438 * 12 11 9 28 28 H 0.97000 * 119.99813 * 180.02562 * 18 17 7 29 29 H 0.97003 * 120.00036 * 0.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1975 2.6648 -0.0057 5 6 1.5109 4.0112 -0.0110 6 6 2.8326 4.4176 -0.0111 7 6 3.8487 3.4797 -0.0065 8 6 5.2876 3.9278 -0.0061 9 6 5.8061 3.9534 -1.4208 10 1 5.1586 3.6729 -2.2385 11 6 7.1074 4.3341 -1.6714 12 7 7.8960 4.6752 -0.6757 13 14 7.7503 4.3652 -3.4249 14 1 6.9383 5.3099 -4.2332 15 1 9.1681 4.8069 -3.4246 16 1 7.6555 3.0041 -4.0112 17 6 3.5439 2.1272 -0.0012 18 7 4.5712 1.1760 0.0040 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 0.1640 2.3508 -0.0061 23 1 0.7211 4.7479 -0.0150 24 1 3.0720 5.4707 -0.0149 25 1 5.3569 4.9267 0.4245 26 1 5.8839 3.2343 0.5870 27 1 8.8116 4.9427 -0.8519 28 1 4.3562 0.2301 0.0074 29 1 5.4978 1.4628 0.0043 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307527735.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:31 Heat of formation + Delta-G solvation = 10.585458 kcal Electronic energy + Delta-G solvation = -12788.092566 eV Core-core repulsion = 10608.525113 eV Total energy + Delta-G solvation = -2179.567453 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.77375 -34.05599 -33.19791 -31.27013 -29.13757 -28.13580 -26.70897 -23.30600 -21.90345 -20.23015 -16.95967 -16.44494 -16.26657 -15.89019 -14.64718 -14.37802 -13.73436 -13.52458 -13.34486 -12.95307 -12.82089 -12.27840 -12.02692 -11.60990 -11.11911 -11.00462 -10.55090 -10.49173 -10.01304 -9.88131 -9.63599 -9.45136 -8.84592 -8.43354 -7.26691 -6.52102 -6.03920 -4.09099 1.84625 1.96478 2.28239 2.76729 3.31437 3.35650 3.39446 4.37656 4.54961 4.65073 5.10089 5.11534 5.28720 5.39371 5.64903 5.72138 5.97568 6.16448 6.33295 6.58507 6.89001 6.91810 7.20650 7.44693 7.61870 7.76221 7.90898 8.17941 8.32755 8.52144 8.96650 9.55225 11.03935 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.038924 B = 0.007472 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.176742 B = 3746.189245 C = 4020.293608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.149 6.149 3 C -0.173 4.173 4 C -0.110 4.110 5 C -0.167 4.167 6 C -0.082 4.082 7 C -0.098 4.098 8 C 0.058 3.942 9 C -0.510 4.510 10 H 0.056 0.944 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.244 3.756 18 N -0.865 5.865 19 H 0.099 0.901 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.110 0.890 23 H 0.111 0.889 24 H 0.119 0.881 25 H 0.029 0.971 26 H 0.025 0.975 27 H 0.262 0.738 28 H 0.388 0.612 29 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 -6.550 1.972 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.089 5.911 3 C -0.289 4.289 4 C -0.133 4.133 5 C -0.189 4.189 6 C -0.102 4.102 7 C -0.104 4.104 8 C 0.021 3.979 9 C -0.548 4.548 10 H 0.074 0.926 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C 0.133 3.867 18 N -0.405 5.405 19 H 0.118 0.882 20 H 0.098 0.902 21 H 0.098 0.902 22 H 0.128 0.872 23 H 0.129 0.871 24 H 0.137 0.863 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.216 0.784 29 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -11.025 -7.499 2.013 13.485 hybrid contribution -0.213 0.959 -1.036 1.428 sum -11.237 -6.540 0.977 13.039 Atomic orbital electron populations 1.23527 0.95445 1.06094 1.05241 1.84835 1.05925 1.05681 1.94643 1.20827 0.94896 0.95098 1.18112 1.20604 0.96586 0.93049 1.03075 1.20661 0.96304 0.94615 1.07306 1.20900 0.91699 0.99216 0.98393 1.20163 0.98926 0.90038 1.01298 1.18156 0.85355 0.96972 0.97437 1.21055 0.96371 1.45275 0.92119 0.92593 1.25006 0.96916 0.95273 0.97075 1.69946 1.07112 1.45430 1.30849 0.86621 0.77706 0.78545 0.84947 1.20209 1.21317 1.20236 1.17161 0.85832 0.89634 0.94072 1.42676 1.07775 1.06221 1.83812 0.88208 0.90217 0.90183 0.87218 0.87129 0.86325 0.95231 0.95730 0.92813 0.78403 0.75679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.15 101.05 0.92 -0.51 15 2 S -0.15 -2.22 21.09 -107.50 -2.27 -4.48 15 3 C -0.17 -3.14 6.12 -38.92 -0.24 -3.38 15 4 C -0.11 -1.84 9.36 -39.40 -0.37 -2.21 15 5 C -0.17 -2.88 10.04 -39.57 -0.40 -3.28 15 6 C -0.08 -1.62 9.67 -39.55 -0.38 -2.00 15 7 C -0.10 -2.18 5.08 -104.45 -0.53 -2.71 15 8 C 0.06 1.47 4.54 -29.04 -0.13 1.33 15 9 C -0.51 -13.99 9.09 -34.44 -0.31 -14.31 15 10 H 0.06 1.56 7.74 -52.48 -0.41 1.16 15 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 12 N -0.89 -25.89 13.29 55.43 0.74 -25.15 15 13 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 15 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 C 0.24 4.99 6.74 -83.50 -0.56 4.43 15 18 N -0.86 -16.41 8.94 32.54 0.29 -16.12 15 19 H 0.10 0.85 8.14 -51.92 -0.42 0.43 15 20 H 0.08 0.80 7.76 -51.92 -0.40 0.40 15 21 H 0.08 0.83 7.74 -51.92 -0.40 0.42 15 22 H 0.11 1.52 5.88 -52.48 -0.31 1.21 15 23 H 0.11 1.59 8.06 -52.49 -0.42 1.16 15 24 H 0.12 2.25 8.06 -52.49 -0.42 1.82 15 25 H 0.03 0.79 8.05 -51.93 -0.42 0.37 15 26 H 0.02 0.64 6.81 -51.93 -0.35 0.29 15 27 H 0.26 7.22 8.31 -40.82 -0.34 6.89 15 28 H 0.39 6.47 7.38 -40.82 -0.30 6.17 15 29 H 0.41 8.25 6.94 -40.82 -0.28 7.97 15 LS Contribution 260.29 15.07 3.92 3.92 Total: -1.00 -29.29 260.29 -7.71 -37.00 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -3.28 Total: 9.52 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.10 Total: -21.11 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 1.03 Total: -41.27 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -2.27 Total: -4.48 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.29 -7.71 -37.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307527735.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.589 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds