Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 102.99929 * 2 1 4 4 C 1.38730 * 120.10185 * 359.97438 * 3 2 1 5 5 C 1.38248 * 119.99103 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.20112 * 359.97160 * 5 4 3 7 7 C 1.50695 * 119.90019 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47445 * 90.00470 * 7 6 5 9 9 H 1.08002 * 119.99643 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00139 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00299 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99683 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47258 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47127 * 120.00382 * 12 10 8 15 15 H 1.48502 * 109.46976 * 240.00058 * 12 10 8 16 16 C 1.38287 * 120.20063 * 0.02562 * 6 5 4 17 17 C 1.38648 * 120.00837 * 359.78377 * 16 6 5 18 18 N 1.40006 * 120.10085 * 180.23789 * 17 16 6 19 19 H 1.09001 * 109.47190 * 299.99963 * 1 2 3 20 20 H 1.09004 * 109.47089 * 60.00096 * 1 2 3 21 21 H 1.09004 * 109.47568 * 180.02562 * 1 2 3 22 22 H 1.07992 * 120.00469 * 359.97438 * 4 3 2 23 23 H 1.08001 * 119.90004 * 180.02562 * 5 4 3 24 24 H 1.09000 * 109.47191 * 210.00670 * 7 6 5 25 25 H 1.09006 * 109.47244 * 330.00310 * 7 6 5 26 26 H 0.96998 * 120.00227 * 179.97438 * 11 10 8 27 27 H 1.08003 * 119.99891 * 180.02562 * 16 6 5 28 28 H 0.97001 * 119.99586 * 180.21321 * 18 17 16 29 29 H 0.96992 * 119.99738 * 0.20317 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1974 2.6647 -0.0005 5 6 1.5110 4.0112 0.0000 6 6 2.8326 4.4175 0.0017 7 6 3.1667 5.8870 0.0028 8 6 3.2766 6.3761 1.4240 9 1 3.1198 5.6914 2.2443 10 6 3.5764 7.6979 1.6769 11 7 3.7669 8.5318 0.6780 12 14 3.7119 8.3042 3.4386 13 1 3.4544 7.1776 4.3711 14 1 5.0766 8.8402 3.6740 15 1 2.7118 9.3770 3.6712 16 6 3.8487 3.4796 0.0023 17 6 3.5439 2.1270 0.0057 18 7 4.5712 1.1758 0.0114 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 0.1641 2.3509 -0.0014 23 1 0.7212 4.7479 0.0000 24 1 4.1156 6.0443 -0.5100 25 1 2.3799 6.4389 -0.5115 26 1 3.9774 9.4617 0.8560 27 1 4.8799 3.8006 0.0040 28 1 4.3562 0.2299 0.0107 29 1 5.4977 1.4626 0.0158 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307649140.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = 8.842573 kcal Electronic energy + Delta-G solvation = -12560.725987 eV Core-core repulsion = 10381.082957 eV Total energy + Delta-G solvation = -2179.643030 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.75498 -34.51781 -33.10048 -31.29872 -28.91914 -28.22931 -26.97035 -23.44124 -21.74513 -20.37554 -17.22291 -16.55871 -16.29774 -15.68102 -14.66877 -14.44255 -13.86819 -13.77149 -13.49887 -12.94271 -12.85420 -12.30102 -12.09320 -11.51850 -11.24342 -10.90229 -10.59904 -10.39160 -10.16336 -10.06005 -9.59301 -9.45113 -8.70600 -8.42370 -7.50332 -6.64875 -6.03295 -4.07456 1.79155 1.95245 2.22094 2.69961 3.29729 3.37375 3.42938 4.23392 4.37650 4.55521 5.07375 5.09828 5.29425 5.34192 5.63357 5.85938 5.96561 6.16162 6.30017 6.54712 6.73322 7.02945 7.20820 7.43004 7.56784 7.84187 7.91971 7.93248 8.08452 8.32493 8.98165 9.56253 11.05985 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.043629 B = 0.006331 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.618197 B = 4421.743590 C = 4577.071206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.157 6.157 3 C -0.188 4.188 4 C -0.087 4.087 5 C -0.161 4.161 6 C 0.014 3.986 7 C 0.046 3.954 8 C -0.509 4.509 9 H 0.058 0.942 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.185 4.185 17 C 0.235 3.765 18 N -0.879 5.879 19 H 0.081 0.919 20 H 0.080 0.920 21 H 0.100 0.900 22 H 0.112 0.888 23 H 0.119 0.881 24 H 0.029 0.971 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.122 0.878 28 H 0.394 0.606 29 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 -14.551 -1.912 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.080 5.920 3 C -0.304 4.304 4 C -0.110 4.110 5 C -0.182 4.182 6 C 0.011 3.989 7 C 0.009 3.991 8 C -0.547 4.547 9 H 0.076 0.924 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.723 3.277 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.209 4.209 17 C 0.127 3.873 18 N -0.419 5.419 19 H 0.100 0.900 20 H 0.099 0.901 21 H 0.118 0.882 22 H 0.130 0.870 23 H 0.137 0.863 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.222 0.778 29 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.811 -15.358 -1.949 15.734 hybrid contribution -0.491 1.326 0.997 1.730 sum -3.303 -14.032 -0.952 14.447 Atomic orbital electron populations 1.23526 0.94934 1.06152 1.05485 1.84636 1.06596 1.05773 1.94976 1.20672 0.94685 0.95032 1.19992 1.20800 0.96751 0.93160 1.00282 1.20789 0.96758 0.94221 1.06433 1.20514 0.91786 0.98146 0.88422 1.18397 0.97793 0.85086 0.97825 1.21082 1.47849 0.94355 0.91432 0.92354 1.25008 0.95312 0.96808 0.97240 1.69964 1.48285 1.04460 1.30630 0.86482 0.77662 0.78797 0.84804 1.19655 1.20962 1.20948 1.20492 0.99970 0.89615 1.10868 1.17272 0.86173 0.89423 0.94384 1.42472 1.06512 1.06950 1.86006 0.90038 0.90069 0.88172 0.86961 0.86316 0.95232 0.95115 0.92909 0.86031 0.77787 0.77525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.15 101.05 0.92 -0.46 15 2 S -0.16 -2.16 21.09 -107.50 -2.27 -4.43 15 3 C -0.19 -3.25 6.12 -38.92 -0.24 -3.48 15 4 C -0.09 -1.52 9.36 -39.40 -0.37 -1.89 15 5 C -0.16 -3.22 9.69 -39.57 -0.38 -3.60 15 6 C 0.01 0.30 5.07 -104.60 -0.53 -0.23 15 7 C 0.05 1.19 5.10 -29.04 -0.15 1.04 15 8 C -0.51 -14.30 9.09 -34.44 -0.31 -14.62 15 9 H 0.06 1.64 7.74 -52.49 -0.41 1.24 15 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 11 N -0.89 -26.39 13.29 55.43 0.74 -25.65 15 12 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 15 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 16 C -0.19 -3.73 9.54 -39.41 -0.38 -4.11 15 17 C 0.24 4.20 6.76 -83.49 -0.56 3.63 15 18 N -0.88 -12.43 9.04 32.55 0.29 -12.13 15 19 H 0.08 0.84 7.75 -51.92 -0.40 0.44 15 20 H 0.08 0.81 7.75 -51.92 -0.40 0.41 15 21 H 0.10 0.82 8.14 -51.92 -0.42 0.40 15 22 H 0.11 1.64 5.88 -52.49 -0.31 1.33 15 23 H 0.12 2.30 8.06 -52.49 -0.42 1.87 15 24 H 0.03 0.80 8.08 -51.93 -0.42 0.38 15 25 H 0.03 0.83 8.08 -51.93 -0.42 0.41 15 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 27 H 0.12 2.36 8.06 -52.48 -0.42 1.94 15 28 H 0.39 5.04 7.38 -40.82 -0.30 4.74 15 29 H 0.40 4.81 8.85 -40.82 -0.36 4.45 15 LS Contribution 263.69 15.07 3.97 3.97 Total: -1.00 -30.32 263.69 -7.80 -38.12 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.42 Total: 5.73 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -2.10 Total: -22.18 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 1.03 Total: -37.79 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -2.27 Total: -4.43 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.32 -7.80 -38.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307649140.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.965 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds