Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 102.99929 * 2 1 4 4 C 1.38730 * 120.10185 * 359.97438 * 3 2 1 5 5 C 1.38248 * 119.99103 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.20112 * 359.97160 * 5 4 3 7 7 C 1.50695 * 119.90019 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47445 * 90.00470 * 7 6 5 9 9 H 1.08002 * 119.99643 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00139 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00299 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99683 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47258 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47127 * 120.00382 * 12 10 8 15 15 H 1.48502 * 109.46976 * 240.00058 * 12 10 8 16 16 C 1.38287 * 120.20063 * 0.02562 * 6 5 4 17 17 C 1.38648 * 120.00837 * 359.78377 * 16 6 5 18 18 N 1.40006 * 120.10085 * 180.23789 * 17 16 6 19 19 H 1.09001 * 109.47190 * 299.99963 * 1 2 3 20 20 H 1.09004 * 109.47089 * 60.00096 * 1 2 3 21 21 H 1.09004 * 109.47568 * 180.02562 * 1 2 3 22 22 H 1.07992 * 120.00469 * 359.97438 * 4 3 2 23 23 H 1.08001 * 119.90004 * 180.02562 * 5 4 3 24 24 H 1.09000 * 109.47191 * 210.00670 * 7 6 5 25 25 H 1.09006 * 109.47244 * 330.00310 * 7 6 5 26 26 H 0.96998 * 120.00227 * 179.97438 * 11 10 8 27 27 H 1.08003 * 119.99891 * 180.02562 * 16 6 5 28 28 H 0.97001 * 119.99586 * 180.21321 * 18 17 16 29 29 H 0.96992 * 119.99738 * 0.20317 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1974 2.6647 -0.0005 5 6 1.5110 4.0112 0.0000 6 6 2.8326 4.4175 0.0017 7 6 3.1667 5.8870 0.0028 8 6 3.2766 6.3761 1.4240 9 1 3.1198 5.6914 2.2443 10 6 3.5764 7.6979 1.6769 11 7 3.7669 8.5318 0.6780 12 14 3.7119 8.3042 3.4386 13 1 3.4544 7.1776 4.3711 14 1 5.0766 8.8402 3.6740 15 1 2.7118 9.3770 3.6712 16 6 3.8487 3.4796 0.0023 17 6 3.5439 2.1270 0.0057 18 7 4.5712 1.1758 0.0114 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 0.1641 2.3509 -0.0014 23 1 0.7212 4.7479 0.0000 24 1 4.1156 6.0443 -0.5100 25 1 2.3799 6.4389 -0.5115 26 1 3.9774 9.4617 0.8560 27 1 4.8799 3.8006 0.0040 28 1 4.3562 0.2299 0.0107 29 1 5.4977 1.4626 0.0158 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307649140.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = -9.775335 kcal Electronic energy + Delta-G solvation = -12561.533320 eV Core-core repulsion = 10381.082957 eV Total energy + Delta-G solvation = -2180.450363 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.22360 -36.09531 -34.92578 -33.01506 -30.02451 -29.55577 -28.72267 -25.40049 -23.19542 -21.99688 -18.57683 -18.41173 -17.84798 -17.17116 -16.40673 -15.80685 -15.29286 -14.84238 -14.77409 -14.47645 -14.35043 -13.84817 -13.42918 -13.29043 -12.99999 -12.66296 -12.45462 -12.15287 -11.74956 -11.52050 -11.28965 -11.06314 -10.60816 -10.24565 -8.85660 -8.23926 -7.85478 -6.32952 0.45760 0.72263 0.73744 1.39696 1.40135 1.53961 1.59689 2.39920 2.96118 3.01165 3.11033 3.96097 4.29102 4.32986 4.35771 4.49649 4.64104 4.82680 4.90435 5.01227 5.21652 5.34012 5.38508 5.49018 5.74722 5.95756 6.11523 6.19757 6.55457 6.79523 6.98271 7.35360 8.89656 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.043629 B = 0.006331 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.618197 B = 4421.743590 C = 4577.071206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.147 6.147 3 C -0.194 4.194 4 C -0.079 4.079 5 C -0.177 4.177 6 C -0.016 4.016 7 C 0.056 3.944 8 C -0.526 4.526 9 H 0.053 0.947 10 C 0.004 3.996 11 N -0.930 5.930 12 Si 0.966 3.034 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.275 1.275 16 C -0.200 4.200 17 C 0.235 3.765 18 N -0.863 5.863 19 H 0.086 0.914 20 H 0.089 0.911 21 H 0.129 0.871 22 H 0.145 0.855 23 H 0.115 0.885 24 H 0.004 0.996 25 H 0.006 0.994 26 H 0.266 0.734 27 H 0.117 0.883 28 H 0.404 0.596 29 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 -16.786 -0.920 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.090 5.910 3 C -0.310 4.310 4 C -0.102 4.102 5 C -0.199 4.199 6 C -0.019 4.019 7 C 0.019 3.981 8 C -0.564 4.564 9 H 0.071 0.929 10 C -0.194 4.194 11 N -0.570 5.570 12 Si 0.791 3.209 13 H -0.191 1.191 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.224 4.224 17 C 0.125 3.875 18 N -0.404 5.404 19 H 0.105 0.895 20 H 0.108 0.892 21 H 0.147 0.853 22 H 0.163 0.837 23 H 0.133 0.867 24 H 0.022 0.978 25 H 0.024 0.976 26 H 0.075 0.925 27 H 0.135 0.865 28 H 0.234 0.766 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.657 -17.633 -0.962 18.034 hybrid contribution -0.265 1.852 0.632 1.975 sum -3.921 -15.781 -0.330 16.264 Atomic orbital electron populations 1.23720 0.91829 1.08305 1.06166 1.84627 1.09958 1.01909 1.94485 1.21086 0.94381 0.97725 1.17834 1.21070 0.98551 0.91878 0.98699 1.20799 0.95683 0.95758 1.07656 1.20213 0.93555 0.96157 0.91958 1.18125 0.95544 0.87999 0.96434 1.21363 1.47949 0.94757 0.92307 0.92885 1.25917 0.94720 0.96918 1.01806 1.70082 1.48973 1.04916 1.32984 0.85378 0.78004 0.78294 0.79263 1.19073 1.20118 1.20064 1.20425 0.99298 0.90731 1.11967 1.17285 0.87563 0.89010 0.93601 1.42408 1.06412 1.06908 1.84720 0.89502 0.89246 0.85309 0.83734 0.86676 0.97763 0.97559 0.92546 0.86522 0.76582 0.76356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.15 113.37 1.04 -1.14 15 2 S -0.15 -3.56 21.09 -56.49 -1.19 -4.75 15 3 C -0.19 -6.30 6.12 22.70 0.14 -6.17 15 4 C -0.08 -2.62 9.36 22.39 0.21 -2.41 15 5 C -0.18 -7.21 9.69 22.28 0.22 -6.99 15 6 C -0.02 -0.75 5.07 -19.85 -0.10 -0.85 15 7 C 0.06 3.07 5.10 29.10 0.15 3.22 15 8 C -0.53 -30.60 9.09 25.60 0.23 -30.37 15 9 H 0.05 3.07 7.74 -2.91 -0.02 3.04 15 10 C 0.00 0.26 5.46 84.65 0.46 0.72 15 11 N -0.93 -56.40 13.29 21.44 0.28 -56.11 15 12 Si 0.97 44.76 29.54 68.60 2.03 46.78 15 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 15 H -0.28 -12.31 7.11 99.48 0.71 -11.61 15 16 C -0.20 -8.22 9.54 22.38 0.21 -8.00 15 17 C 0.24 8.15 6.76 38.24 0.26 8.41 15 18 N -0.86 -22.85 9.04 -50.94 -0.46 -23.31 15 19 H 0.09 1.41 7.75 -2.39 -0.02 1.39 15 20 H 0.09 1.40 7.75 -2.39 -0.02 1.38 15 21 H 0.13 1.46 8.14 -2.39 -0.02 1.44 15 22 H 0.15 3.77 5.88 -2.91 -0.02 3.76 15 23 H 0.12 4.60 8.06 -2.91 -0.02 4.58 15 24 H 0.00 0.24 8.08 -2.39 -0.02 0.22 15 25 H 0.01 0.35 8.08 -2.38 -0.02 0.34 15 26 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 27 H 0.12 4.73 8.06 -2.91 -0.02 4.71 15 28 H 0.40 9.30 7.38 -92.71 -0.68 8.62 15 29 H 0.41 9.26 8.85 -92.71 -0.82 8.44 15 Total: -1.00 -66.49 263.69 3.14 -63.35 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.34 Total: 17.63 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 2.82 Total: -43.60 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -0.18 Total: -79.42 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.19 Total: -4.75 kcal Total: -66.49 3.14 -63.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307649140.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.574 kcal (2) G-P(sol) polarization free energy of solvation -66.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds