Wall clock time and date at job start Mon Mar 30 2020 02:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99545 * 2 1 4 4 H 1.48505 * 109.47027 * 239.99854 * 3 2 1 5 5 H 1.48499 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46991 * 120.00126 * 3 2 1 7 7 C 1.38808 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00132 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99975 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47265 * 325.00224 * 10 9 7 12 12 C 1.52997 * 109.47228 * 204.99880 * 10 9 7 13 13 C 1.52997 * 109.47232 * 64.99997 * 12 10 9 14 14 F 1.39905 * 109.47157 * 59.99991 * 13 12 10 15 15 F 1.39900 * 109.47010 * 300.00382 * 13 12 10 16 16 F 1.39897 * 109.47422 * 180.02562 * 13 12 10 17 17 C 1.53000 * 109.47374 * 84.99705 * 10 9 7 18 18 C 1.53007 * 117.49539 * 8.74745 * 17 10 9 19 19 C 1.53003 * 117.49831 * 300.08973 * 17 10 9 20 20 H 0.96996 * 120.00487 * 0.02562 * 1 2 3 21 21 H 0.96995 * 119.99644 * 359.97438 * 9 7 2 22 22 H 1.09002 * 109.47045 * 304.99939 * 12 10 9 23 23 H 1.09001 * 109.46922 * 185.00146 * 12 10 9 24 24 H 1.09005 * 115.55368 * 154.41548 * 17 10 9 25 25 H 1.08994 * 117.49991 * 359.97438 * 18 17 10 26 26 H 1.09004 * 117.49608 * 145.01831 * 18 17 10 27 27 H 1.09002 * 117.50009 * 214.97194 * 19 17 10 28 28 H 1.08997 * 117.50121 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 -0.5899 12 6 1.1810 -4.7521 -0.6101 13 6 0.9202 -4.4354 -2.0840 14 9 2.1376 -4.3766 -2.7709 15 9 0.2664 -3.2028 -2.1875 16 9 0.1177 -5.4366 -2.6413 17 6 2.4221 -4.0355 1.4364 18 6 1.8135 -3.1985 2.5634 19 6 3.2996 -3.0600 2.2235 20 1 -0.4851 0.8400 -0.0004 21 1 0.3557 -2.3881 0.0002 22 1 0.2325 -4.7979 -0.0749 23 1 1.6905 -5.7124 -0.5294 24 1 2.5635 -5.1006 1.6205 25 1 1.1542 -2.3778 2.2810 26 1 1.5547 -3.7129 3.4890 27 1 4.0179 -3.4833 2.9257 28 1 3.6179 -2.1487 1.7175 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308398926.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:32 Heat of formation + Delta-G solvation = -121.176991 kcal Electronic energy + Delta-G solvation = -16199.570977 eV Core-core repulsion = 13029.680264 eV Total energy + Delta-G solvation = -3169.890713 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.44929 -47.05262 -46.77369 -37.70069 -33.65224 -32.25937 -29.46460 -25.58767 -23.27041 -22.02715 -21.44488 -19.27850 -17.87301 -17.76087 -17.16012 -16.59460 -15.14544 -14.61062 -13.95534 -13.92650 -13.71619 -13.49690 -13.32070 -13.09908 -12.96388 -12.79185 -12.06460 -11.49715 -11.38453 -11.02358 -10.85365 -10.78939 -10.50701 -10.10689 -9.62424 -9.50453 -9.20390 -8.91874 -7.00495 -5.76149 -3.06186 3.38604 3.44585 3.49605 3.49851 4.39542 4.46019 4.61123 4.68313 4.73208 5.42844 5.48588 5.52081 5.71109 5.73920 5.84156 5.93513 6.02435 6.36772 6.42278 6.62550 6.69114 6.98109 7.26882 7.70430 8.40195 9.52717 10.04799 10.40819 11.45552 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.011848 C = 0.009229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.090293 B = 2362.655079 C = 3033.213768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.715 5.715 10 C 0.201 3.799 11 H 0.063 0.937 12 C -0.168 4.168 13 C 0.451 3.549 14 F -0.190 7.190 15 F -0.158 7.158 16 F -0.202 7.202 17 C -0.179 4.179 18 C -0.163 4.163 19 C -0.175 4.175 20 H 0.255 0.745 21 H 0.388 0.612 22 H 0.104 0.896 23 H 0.100 0.900 24 H 0.085 0.915 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 -9.972 0.181 10.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.090 3.910 11 H 0.081 0.919 12 C -0.207 4.207 13 C 0.397 3.603 14 F -0.172 7.172 15 F -0.139 7.139 16 F -0.183 7.183 17 C -0.200 4.200 18 C -0.200 4.200 19 C -0.212 4.212 20 H 0.065 0.935 21 H 0.223 0.777 22 H 0.123 0.877 23 H 0.119 0.881 24 H 0.103 0.897 25 H 0.138 0.862 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.736 -9.793 0.122 10.168 hybrid contribution 0.136 0.892 -0.168 0.917 sum 2.872 -8.901 -0.045 9.353 Atomic orbital electron populations 1.69646 1.05012 1.25738 1.57078 1.24694 0.95421 0.97492 1.02729 0.86346 0.78610 0.83866 0.77823 1.21329 1.21770 1.21261 1.19067 0.90794 0.83772 1.43250 0.91186 1.42487 1.05863 0.99298 1.88059 1.19696 0.93864 0.85356 0.92098 0.91922 1.23141 1.05374 1.02781 0.89406 1.20583 0.73852 0.74854 0.90978 1.93131 1.45241 1.96267 1.82545 1.93323 1.81029 1.42852 1.96673 1.93122 1.74934 1.62193 1.88095 1.23105 1.06315 0.95232 0.95391 1.22936 0.96847 1.03541 0.96696 1.22858 0.93489 1.01905 1.02901 0.93472 0.77695 0.87720 0.88121 0.89663 0.86180 0.91261 0.90959 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.44 15 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 15 3 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 15 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 15 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 15 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 7 C -0.24 -6.22 8.15 -15.06 -0.12 -6.34 15 8 H 0.07 1.80 6.91 -52.49 -0.36 1.44 15 9 N -0.72 -16.62 2.37 -53.43 -0.13 -16.75 15 10 C 0.20 3.75 2.64 -67.94 -0.18 3.57 15 11 H 0.06 1.24 7.60 -51.93 -0.39 0.84 15 12 C -0.17 -2.60 4.86 -26.73 -0.13 -2.73 15 13 C 0.45 7.91 3.16 37.16 0.12 8.03 15 14 F -0.19 -3.44 16.71 2.25 0.04 -3.40 15 15 F -0.16 -3.38 15.18 2.25 0.03 -3.35 15 16 F -0.20 -3.30 17.32 2.25 0.04 -3.26 15 17 C -0.18 -3.04 5.71 -90.62 -0.52 -3.56 15 18 C -0.16 -2.99 9.74 -26.69 -0.26 -3.25 15 19 C -0.17 -3.10 9.87 -26.69 -0.26 -3.36 15 20 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 21 H 0.39 9.75 7.06 -40.82 -0.29 9.46 15 22 H 0.10 1.55 8.14 -51.93 -0.42 1.13 15 23 H 0.10 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.09 1.23 8.11 -51.93 -0.42 0.81 15 25 H 0.12 2.66 6.68 -51.93 -0.35 2.31 15 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 28 H 0.10 2.09 6.22 -51.93 -0.32 1.77 15 LS Contribution 248.60 15.07 3.75 3.75 Total: -1.00 -28.28 248.60 -4.98 -33.26 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -2.96 Total: 7.05 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.45 Total: -7.91 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.60 Total: -43.18 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 0.11 Total: -10.01 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.28 -4.98 -33.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308398926.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.913 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds