Wall clock time and date at job start Mon Mar 30 2020 02:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99545 * 2 1 4 4 H 1.48505 * 109.47027 * 239.99854 * 3 2 1 5 5 H 1.48499 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46991 * 120.00126 * 3 2 1 7 7 C 1.38808 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00132 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99975 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47265 * 325.00224 * 10 9 7 12 12 C 1.52997 * 109.47228 * 204.99880 * 10 9 7 13 13 C 1.52997 * 109.47232 * 64.99997 * 12 10 9 14 14 F 1.39905 * 109.47157 * 59.99991 * 13 12 10 15 15 F 1.39900 * 109.47010 * 300.00382 * 13 12 10 16 16 F 1.39897 * 109.47422 * 180.02562 * 13 12 10 17 17 C 1.53000 * 109.47374 * 84.99705 * 10 9 7 18 18 C 1.53007 * 117.49539 * 8.74745 * 17 10 9 19 19 C 1.53003 * 117.49831 * 300.08973 * 17 10 9 20 20 H 0.96996 * 120.00487 * 0.02562 * 1 2 3 21 21 H 0.96995 * 119.99644 * 359.97438 * 9 7 2 22 22 H 1.09002 * 109.47045 * 304.99939 * 12 10 9 23 23 H 1.09001 * 109.46922 * 185.00146 * 12 10 9 24 24 H 1.09005 * 115.55368 * 154.41548 * 17 10 9 25 25 H 1.08994 * 117.49991 * 359.97438 * 18 17 10 26 26 H 1.09004 * 117.49608 * 145.01831 * 18 17 10 27 27 H 1.09002 * 117.50009 * 214.97194 * 19 17 10 28 28 H 1.08997 * 117.50121 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 -0.5899 12 6 1.1810 -4.7521 -0.6101 13 6 0.9202 -4.4354 -2.0840 14 9 2.1376 -4.3766 -2.7709 15 9 0.2664 -3.2028 -2.1875 16 9 0.1177 -5.4366 -2.6413 17 6 2.4221 -4.0355 1.4364 18 6 1.8135 -3.1985 2.5634 19 6 3.2996 -3.0600 2.2235 20 1 -0.4851 0.8400 -0.0004 21 1 0.3557 -2.3881 0.0002 22 1 0.2325 -4.7979 -0.0749 23 1 1.6905 -5.7124 -0.5294 24 1 2.5635 -5.1006 1.6205 25 1 1.1542 -2.3778 2.2810 26 1 1.5547 -3.7129 3.4890 27 1 4.0179 -3.4833 2.9257 28 1 3.6179 -2.1487 1.7175 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308398926.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:32 Heat of formation + Delta-G solvation = -137.300780 kcal Electronic energy + Delta-G solvation = -16200.270157 eV Core-core repulsion = 13029.680264 eV Total energy + Delta-G solvation = -3170.589893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.87558 -48.43143 -48.29873 -39.21102 -35.34914 -33.94654 -31.26521 -27.20098 -25.15711 -23.42837 -22.86342 -20.74873 -19.41246 -19.26358 -18.91975 -18.04662 -16.69352 -16.35551 -15.59717 -15.45989 -15.26544 -15.05390 -14.79917 -14.60314 -14.49957 -14.34369 -13.65860 -12.93054 -12.84837 -12.78101 -12.71975 -12.46191 -12.09985 -11.93133 -11.56151 -10.99964 -10.82961 -10.60616 -8.95403 -7.86407 -5.13035 1.48088 1.49385 1.54580 2.02111 2.58864 3.02386 3.13222 3.30257 3.33204 3.48712 3.96733 4.08257 4.30904 4.35534 4.46780 4.61732 4.65304 4.91173 5.00425 5.15165 5.28532 5.46279 5.67277 5.74180 6.33994 7.42357 8.14435 8.38136 9.36165 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.011848 C = 0.009229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.090293 B = 2362.655079 C = 3033.213768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.070 4.070 3 Si 0.956 3.044 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.218 4.218 8 H 0.072 0.928 9 N -0.722 5.722 10 C 0.192 3.808 11 H 0.054 0.946 12 C -0.156 4.156 13 C 0.448 3.552 14 F -0.195 7.195 15 F -0.187 7.187 16 F -0.193 7.193 17 C -0.162 4.162 18 C -0.172 4.172 19 C -0.178 4.178 20 H 0.247 0.753 21 H 0.377 0.623 22 H 0.114 0.886 23 H 0.146 0.854 24 H 0.128 0.872 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -11.981 0.833 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.262 4.262 3 Si 0.787 3.213 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.205 1.205 7 C -0.350 4.350 8 H 0.090 0.910 9 N -0.363 5.363 10 C 0.083 3.917 11 H 0.072 0.928 12 C -0.194 4.194 13 C 0.394 3.606 14 F -0.176 7.176 15 F -0.168 7.168 16 F -0.175 7.175 17 C -0.182 4.182 18 C -0.209 4.209 19 C -0.215 4.215 20 H 0.055 0.945 21 H 0.210 0.790 22 H 0.133 0.867 23 H 0.164 0.836 24 H 0.146 0.854 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.954 -11.842 0.775 12.509 hybrid contribution -0.174 1.411 -0.396 1.476 sum 3.779 -10.431 0.379 11.101 Atomic orbital electron populations 1.69789 1.06239 1.25515 1.59887 1.25330 0.96102 1.00299 1.04502 0.85468 0.77336 0.80630 0.77886 1.21166 1.22685 1.20536 1.19338 0.90916 0.84903 1.39886 0.91045 1.42585 1.05439 1.00306 1.87980 1.19929 0.93713 0.84523 0.93573 0.92815 1.23140 1.05724 1.03322 0.87248 1.20941 0.73493 0.73951 0.92222 1.93122 1.45429 1.96242 1.82842 1.93272 1.81677 1.44991 1.96880 1.93136 1.74708 1.61483 1.88126 1.23070 1.04761 0.97180 0.93236 1.22795 0.96466 1.03103 0.98524 1.22854 0.93744 1.01279 1.03612 0.94450 0.78982 0.86729 0.83601 0.85380 0.90604 0.88577 0.87842 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.10 13.06 21.65 0.28 -57.82 15 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 15 3 Si 0.96 46.24 29.55 68.60 2.03 48.27 15 4 H -0.28 -13.53 7.11 99.48 0.71 -12.82 15 5 H -0.30 -14.82 7.11 99.48 0.71 -14.11 15 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 7 C -0.22 -11.51 8.15 84.03 0.69 -10.82 15 8 H 0.07 3.68 6.91 -2.91 -0.02 3.66 15 9 N -0.72 -33.51 2.37 -322.96 -0.76 -34.28 15 10 C 0.19 6.75 2.64 44.99 0.12 6.87 15 11 H 0.05 2.01 7.60 -2.39 -0.02 2.00 15 12 C -0.16 -4.31 4.86 30.59 0.15 -4.17 15 13 C 0.45 14.92 3.16 71.98 0.23 15.14 15 14 F -0.19 -6.72 16.71 44.97 0.75 -5.97 15 15 F -0.19 -8.01 15.18 44.97 0.68 -7.33 15 16 F -0.19 -5.88 17.32 44.97 0.78 -5.10 15 17 C -0.16 -4.93 5.71 -10.79 -0.06 -4.99 15 18 C -0.17 -5.95 9.74 30.62 0.30 -5.65 15 19 C -0.18 -5.88 9.87 30.62 0.30 -5.57 15 20 H 0.25 14.70 8.31 -92.71 -0.77 13.93 15 21 H 0.38 19.20 7.06 -92.71 -0.65 18.54 15 22 H 0.11 3.03 8.14 -2.39 -0.02 3.01 15 23 H 0.15 2.77 8.14 -2.39 -0.02 2.75 15 24 H 0.13 2.91 8.11 -2.38 -0.02 2.89 15 25 H 0.08 3.37 6.68 -2.39 -0.02 3.36 15 26 H 0.10 2.79 8.14 -2.38 -0.02 2.77 15 27 H 0.10 2.77 8.14 -2.39 -0.02 2.76 15 28 H 0.07 2.86 6.22 -2.39 -0.01 2.84 15 Total: -1.00 -62.06 248.60 6.47 -55.58 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.53 Total: 19.30 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 2.19 Total: -12.65 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -0.48 Total: -92.10 kcal Atomic # 9 Polarization: -20.61 SS G_CDS: 2.21 Total: -18.40 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -62.06 6.47 -55.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308398926.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.720 kcal (2) G-P(sol) polarization free energy of solvation -62.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds