Wall clock time and date at job start Mon Mar 30 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 C 1.53001 * 114.16985 * 139.67330 * 12 11 10 14 14 C 1.53003 * 109.47082 * 91.15650 * 13 12 11 15 15 F 1.39893 * 109.47243 * 59.99909 * 14 13 12 16 16 F 1.39902 * 109.46882 * 179.97438 * 14 13 12 17 17 F 1.39903 * 109.47072 * 299.99857 * 14 13 12 18 18 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 23 23 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 24 24 H 1.09002 * 114.16514 * 272.37172 * 12 11 10 25 25 H 1.09001 * 109.47226 * 211.15106 * 13 12 11 26 26 H 1.09003 * 109.47066 * 331.15609 * 13 12 11 27 27 H 1.09000 * 113.47556 * 253.46531 * 18 10 9 28 28 H 1.08997 * 113.47949 * 23.93922 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 6 1.7017 -6.5030 -1.7647 14 6 2.7177 -7.1462 -2.7108 15 9 3.6843 -7.8278 -1.9636 16 9 2.0619 -8.0471 -3.5566 17 9 3.3360 -6.1521 -3.4768 18 6 1.5184 -4.8986 0.2386 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 1.6756 -3.8466 -2.0765 23 1 3.4598 -3.7930 -1.7440 24 1 3.3715 -5.8925 -0.4639 25 1 1.2201 -7.2776 -1.1679 26 1 0.9486 -5.9719 -2.3468 27 1 1.6915 -5.3047 1.2352 28 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308423021.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:52 Heat of formation + Delta-G solvation = -150.307602 kcal Electronic energy + Delta-G solvation = -15415.356542 eV Core-core repulsion = 12244.202631 eV Total energy + Delta-G solvation = -3171.153911 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -51.01280 -48.52525 -48.48985 -40.97620 -35.28585 -33.57993 -30.33812 -27.03268 -26.78073 -24.56384 -22.59197 -20.82139 -19.43911 -19.18976 -18.53011 -18.34991 -16.80214 -16.39689 -15.78628 -15.70145 -15.31836 -15.24386 -14.93686 -14.67185 -14.65229 -14.43739 -13.70722 -13.64849 -13.46738 -12.88635 -12.84769 -12.69554 -12.31408 -12.14055 -11.59839 -11.35488 -11.16366 -10.61856 -9.60925 -8.23925 -6.33872 1.39669 1.40863 1.52473 1.86880 2.38886 2.85616 3.01458 3.08545 3.14349 3.41978 3.47645 3.91873 4.19309 4.43153 4.46864 4.58483 4.64535 4.72476 4.84066 4.98094 5.02498 5.26578 5.59063 5.79396 6.09165 6.47331 6.80573 7.35858 8.87027 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.055650 B = 0.005773 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.027021 B = 4849.147772 C = 4976.657359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.267 1.267 6 H -0.279 1.279 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.174 3.826 10 N -0.494 5.494 11 C 0.008 3.992 12 C -0.100 4.100 13 C -0.148 4.148 14 C 0.455 3.545 15 F -0.188 7.188 16 F -0.189 7.189 17 F -0.192 7.192 18 C 0.006 3.994 19 H 0.266 0.734 20 H 0.003 0.997 21 H -0.016 1.016 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.116 0.884 25 H 0.142 0.858 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.114 -14.844 -4.534 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.204 1.204 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.047 3.953 10 N -0.216 5.216 11 C -0.121 4.121 12 C -0.119 4.119 13 C -0.186 4.186 14 C 0.401 3.599 15 F -0.169 7.169 16 F -0.170 7.170 17 F -0.174 7.174 18 C -0.123 4.123 19 H 0.074 0.926 20 H 0.021 0.979 21 H 0.002 0.998 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.134 0.866 25 H 0.160 0.840 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.518 -14.478 -4.108 15.455 hybrid contribution -0.405 0.847 -0.657 1.146 sum 3.113 -13.631 -4.765 14.772 Atomic orbital electron populations 1.70061 1.07581 1.28003 1.51672 1.25905 0.95810 1.03162 0.94672 0.85388 0.78510 0.78251 0.78510 1.19768 1.19156 1.20431 1.21449 0.93524 0.91479 1.50273 0.92599 1.19937 0.90651 0.90425 0.94320 1.68894 1.33274 1.02325 1.17143 1.23861 1.01748 0.94306 0.92183 1.22649 1.00475 0.92764 0.96028 1.22911 0.96580 1.01602 0.97487 1.20742 0.82112 0.76370 0.80672 1.93164 1.66390 1.81092 1.76281 1.93174 1.80817 1.69542 1.73511 1.93189 1.84700 1.61745 1.77738 1.23801 0.97161 0.91145 1.00196 0.92558 0.97893 0.99848 0.92109 0.91025 0.86591 0.84002 0.86530 0.88835 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.29 21.45 0.28 -55.78 15 2 C 0.00 0.15 5.46 84.66 0.46 0.62 15 3 Si 0.97 44.80 29.54 68.60 2.03 46.82 15 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 7 C -0.53 -30.76 9.39 25.60 0.24 -30.52 15 8 H 0.06 3.25 7.81 -2.91 -0.02 3.23 15 9 C 0.17 9.22 4.57 85.55 0.39 9.61 15 10 N -0.49 -21.16 6.32 -932.37 -5.89 -27.05 15 11 C 0.01 0.29 6.95 83.58 0.58 0.87 15 12 C -0.10 -2.62 3.73 -10.45 -0.04 -2.66 15 13 C -0.15 -2.82 5.17 30.60 0.16 -2.67 15 14 C 0.45 9.78 3.16 71.98 0.23 10.00 15 15 F -0.19 -4.20 16.69 44.97 0.75 -3.45 15 16 F -0.19 -4.04 17.32 44.97 0.78 -3.27 15 17 F -0.19 -4.93 16.73 44.97 0.75 -4.18 15 18 C 0.01 0.19 7.26 83.58 0.61 0.79 15 19 H 0.27 14.95 8.31 -92.71 -0.77 14.18 15 20 H 0.00 0.17 8.08 -2.38 -0.02 0.15 15 21 H -0.02 -0.90 7.30 -2.39 -0.02 -0.92 15 22 H 0.06 2.22 7.15 -2.39 -0.02 2.21 15 23 H 0.07 2.61 8.14 -2.39 -0.02 2.59 15 24 H 0.12 2.90 7.64 -2.39 -0.02 2.88 15 25 H 0.14 1.90 8.14 -2.39 -0.02 1.88 15 26 H 0.12 2.15 7.81 -2.39 -0.02 2.13 15 27 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 28 H 0.07 2.11 7.87 -2.39 -0.02 2.09 15 Total: -1.00 -64.80 253.28 2.49 -62.31 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: 1.16 Total: -1.46 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 2.63 Total: -13.95 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -5.60 Total: -82.83 kcal Atomic # 9 Polarization: -13.18 SS G_CDS: 2.28 Total: -10.89 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.80 2.49 -62.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308423021.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.999 kcal (2) G-P(sol) polarization free energy of solvation -64.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds