Wall clock time and date at job start Mon Mar 30 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00024 * 2 1 4 4 H 1.48504 * 109.46918 * 269.99256 * 3 2 1 5 5 H 1.48495 * 109.47496 * 29.99503 * 3 2 1 6 6 H 1.48497 * 109.47204 * 149.99782 * 3 2 1 7 7 C 1.37874 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00295 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00308 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47482 * 180.02562 * 9 7 2 11 11 C 1.42908 * 113.99980 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.46928 * 180.02562 * 11 10 9 13 13 O 1.42894 * 109.47573 * 64.99707 * 12 11 10 14 14 C 1.35910 * 117.00621 * 180.02562 * 13 12 11 15 15 C 1.39138 * 120.47706 * 180.24394 * 14 13 12 16 16 C 1.38535 * 118.37336 * 180.24194 * 15 14 13 17 17 C 1.38262 * 119.22035 * 359.47237 * 16 15 14 18 18 N 1.31844 * 120.88422 * 0.30388 * 17 16 15 19 19 C 1.31834 * 121.78446 * 359.97438 * 18 17 16 20 20 H 0.97006 * 119.99680 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46915 * 59.99697 * 9 7 2 22 22 H 1.09000 * 109.47348 * 300.00132 * 9 7 2 23 23 H 1.08995 * 109.46753 * 60.00134 * 11 10 9 24 24 H 1.09000 * 109.46896 * 300.00109 * 11 10 9 25 25 H 1.09002 * 109.46851 * 304.99741 * 12 11 10 26 26 H 1.08998 * 109.47422 * 185.00404 * 12 11 10 27 27 H 1.07999 * 120.81005 * 0.02562 * 15 14 13 28 28 H 1.08002 * 120.39207 * 179.75678 * 16 15 14 29 29 H 1.08000 * 119.55595 * 180.28266 * 17 16 15 30 30 H 1.07997 * 119.66066 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0017 11 6 1.5650 -4.8755 0.0013 12 6 2.6479 -5.9562 0.0033 13 8 3.3854 -5.8893 1.2253 14 6 4.3924 -6.7874 1.3883 15 6 5.1539 -6.7902 2.5528 16 6 6.1728 -7.7213 2.6710 17 6 6.3909 -8.6176 1.6410 18 7 5.6478 -8.5912 0.5522 19 6 4.6723 -7.7178 0.3983 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 0.9459 -4.9826 -0.8894 24 1 0.9438 -4.9823 0.8906 25 1 3.3226 -5.7960 -0.8376 26 1 2.1820 -6.9376 -0.0867 27 1 4.9577 -6.0814 3.3437 28 1 6.7866 -7.7499 3.5592 29 1 7.1808 -9.3488 1.7293 30 1 4.0851 -7.7266 -0.5081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385194830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:42 Heat of formation + Delta-G solvation = -53.659753 kcal Electronic energy + Delta-G solvation = -14277.646944 eV Core-core repulsion = 11652.540738 eV Total energy + Delta-G solvation = -2625.106206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.56738 -38.24131 -36.54406 -32.84494 -32.43944 -30.75546 -29.43638 -26.96489 -24.14056 -23.22327 -22.38660 -21.72378 -18.33926 -16.86747 -16.66166 -16.30696 -16.28439 -15.12413 -14.75599 -14.35810 -14.32469 -13.86638 -13.43993 -13.17576 -12.72936 -12.28389 -11.90846 -11.59365 -11.27993 -10.87071 -10.79761 -10.65800 -10.08254 -9.77966 -9.51461 -9.15153 -8.90140 -8.44733 -8.23670 -6.13622 -4.15386 1.04229 1.25010 3.17288 3.29276 3.34260 3.40006 3.74085 4.29980 4.41090 4.61897 4.67614 4.79177 4.96514 5.13109 5.23084 5.29148 5.33840 5.46501 5.78715 5.85753 5.92651 6.02022 6.05643 6.46836 7.02477 7.31407 7.37485 7.76419 7.86638 8.10423 8.49862 8.97130 9.49536 10.97955 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.046591 B = 0.004768 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.825795 B = 5871.524397 C = 6235.272681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.063 3.937 12 C 0.061 3.939 13 O -0.292 6.292 14 C 0.092 3.908 15 C -0.113 4.113 16 C -0.132 4.132 17 C 0.048 3.952 18 N -0.452 5.452 19 C 0.010 3.990 20 H 0.264 0.736 21 H 0.006 0.994 22 H 0.007 0.993 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.155 0.845 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.764 -15.116 3.199 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.015 4.015 12 C -0.014 4.014 13 O -0.204 6.204 14 C 0.043 3.957 15 C -0.140 4.140 16 C -0.152 4.152 17 C -0.110 4.110 18 N -0.162 5.162 19 C -0.148 4.148 20 H 0.074 0.926 21 H 0.024 0.976 22 H 0.025 0.975 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.172 0.828 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.871 -15.378 2.661 17.479 hybrid contribution -0.187 1.387 0.475 1.478 sum 7.684 -13.991 3.136 16.267 Atomic orbital electron populations 1.69963 1.06113 1.27220 1.50515 1.24945 0.94986 0.99453 0.95064 0.86322 0.79688 0.82161 0.78259 1.20428 1.21031 1.19598 1.21048 0.94110 0.89298 1.50916 0.91517 1.20244 0.88742 0.83497 0.95516 1.87925 1.35300 1.12584 1.95223 1.22276 0.93150 0.85469 1.00609 1.23050 0.94119 0.98822 0.85383 1.86260 1.42666 1.51587 1.39866 1.20203 0.89931 0.90309 0.95263 1.21019 0.95470 1.00509 0.96984 1.21999 0.97418 0.95295 1.00450 1.22590 0.99374 0.99241 0.89815 1.67484 1.04007 1.21251 1.23413 1.22942 0.98314 0.94090 0.99488 0.92612 0.97574 0.97493 0.91911 0.93187 0.90976 0.91013 0.83879 0.84269 0.82804 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.52 -15.28 9.43 -34.44 -0.32 -15.61 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.32 5.69 36.00 0.20 5.53 16 10 O -0.39 -9.46 10.29 -40.09 -0.41 -9.87 16 11 C 0.06 1.12 6.32 37.15 0.23 1.35 16 12 C 0.06 0.89 5.13 37.15 0.19 1.08 16 13 O -0.29 -4.85 10.11 -24.31 -0.25 -5.10 16 14 C 0.09 1.32 6.71 -39.07 -0.26 1.06 16 15 C -0.11 -1.42 10.13 -39.14 -0.40 -1.82 16 16 C -0.13 -1.34 10.11 -39.46 -0.40 -1.74 16 17 C 0.05 0.52 11.18 -17.54 -0.20 0.32 16 18 N -0.45 -6.04 10.35 -13.13 -0.14 -6.17 16 19 C 0.01 0.13 10.22 -17.38 -0.18 -0.05 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 21 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 1.01 7.68 -51.93 -0.40 0.61 16 26 H 0.07 0.78 7.68 -51.93 -0.40 0.39 16 27 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.16 1.79 6.32 -52.49 -0.33 1.46 16 LS Contribution 269.82 15.07 4.07 4.07 Total: -1.00 -33.14 269.82 -5.87 -39.01 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -3.63 Total: -4.36 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.22 Total: -8.33 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.60 Total: -32.29 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.66 Total: -14.97 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -33.14 -5.87 -39.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385194830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.651 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds