Wall clock time and date at job start Mon Mar 30 2020 03:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00263 * 2 1 4 4 H 1.48495 * 109.47651 * 270.00344 * 3 2 1 5 5 H 1.48510 * 109.47084 * 30.00288 * 3 2 1 6 6 H 1.48503 * 109.47210 * 149.99915 * 3 2 1 7 7 C 1.37882 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00181 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 O 1.42902 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00121 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47155 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47140 * 180.02562 * 12 11 10 14 14 C 1.35601 * 119.26029 * 270.27668 * 13 12 11 15 15 C 1.35095 * 120.69774 * 180.29172 * 14 13 12 16 16 C 1.41489 * 119.24450 * 359.43431 * 15 14 13 17 17 O 1.22239 * 120.68333 * 180.29939 * 16 15 14 18 18 C 1.41489 * 118.63676 * 0.28549 * 16 15 14 19 19 C 1.35089 * 119.24362 * 359.97438 * 18 16 15 20 20 H 0.97003 * 119.99368 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47140 * 59.99831 * 9 7 2 22 22 H 1.09005 * 109.47250 * 300.00211 * 9 7 2 23 23 H 1.08998 * 109.47006 * 59.99699 * 11 10 9 24 24 H 1.09003 * 109.46917 * 300.00350 * 11 10 9 25 25 H 1.09000 * 109.46635 * 59.99871 * 12 11 10 26 26 H 1.08998 * 109.47103 * 299.99858 * 12 11 10 27 27 H 1.08000 * 119.65966 * 0.02584 * 14 13 12 28 28 H 1.08002 * 120.38235 * 179.71828 * 15 14 13 29 29 H 1.07995 * 120.37518 * 180.02562 * 18 16 15 30 30 H 1.08002 * 119.65224 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 8 3.9878 -2.5415 -0.0010 11 6 5.4123 -2.6544 -0.0009 12 6 5.8068 -4.1327 -0.0002 13 7 7.2672 -4.2484 0.0005 14 6 7.9289 -4.2955 -1.1822 15 6 9.2747 -4.4080 -1.2155 16 6 9.9940 -4.4644 0.0017 17 8 11.2126 -4.5606 0.0022 18 6 9.2738 -4.4070 1.2182 19 6 7.9276 -4.2999 1.1837 20 1 -0.4849 0.8401 0.0004 21 1 3.8752 -0.6806 0.8888 22 1 3.8746 -0.6801 -0.8911 23 1 5.8151 -2.1708 0.8890 24 1 5.8151 -2.1709 -0.8910 25 1 5.4039 -4.6166 -0.8899 26 1 5.4040 -4.6157 0.8901 27 1 7.3739 -4.2470 -2.1074 28 1 9.7962 -4.4496 -2.1604 29 1 9.7944 -4.4474 2.1635 30 1 7.3713 -4.2551 2.1084 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385202581.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:05 Heat of formation + Delta-G solvation = -46.697921 kcal Electronic energy + Delta-G solvation = -14289.127781 eV Core-core repulsion = 11664.323463 eV Total energy + Delta-G solvation = -2624.804318 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.10615 -38.10320 -37.08688 -33.28061 -32.59604 -31.91265 -29.34950 -27.50311 -23.98359 -23.58880 -22.33925 -22.08226 -17.71398 -17.37996 -17.13639 -16.47114 -15.64990 -15.59306 -15.34481 -14.49107 -14.37648 -14.16983 -13.73654 -13.24707 -12.81109 -12.59629 -12.48914 -12.40110 -11.58447 -11.27632 -10.96974 -10.87707 -10.04263 -9.87565 -9.41335 -9.36911 -9.16609 -8.70751 -8.06356 -6.27569 -4.28808 1.19796 1.22269 2.29443 3.13043 3.20431 3.21432 3.74091 4.09734 4.20835 4.43986 4.44776 4.67873 4.85116 5.03403 5.10478 5.15111 5.17946 5.37250 5.60698 5.65123 5.65745 5.91055 6.33660 6.40515 6.57118 6.74824 6.78877 7.37482 7.68329 8.12643 8.41767 8.81425 9.29984 10.85040 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.057240 B = 0.004666 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.050293 B = 5999.597400 C = 6172.316389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.084 0.916 9 C 0.172 3.828 10 O -0.377 6.377 11 C 0.041 3.959 12 C 0.091 3.909 13 N -0.472 5.472 14 C 0.142 3.858 15 C -0.293 4.293 16 C 0.389 3.611 17 O -0.541 6.541 18 C -0.293 4.293 19 C 0.142 3.858 20 H 0.269 0.731 21 H 0.006 0.994 22 H 0.002 0.998 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.164 0.836 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.150 -7.039 0.011 14.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.102 0.898 9 C 0.097 3.903 10 O -0.296 6.296 11 C -0.037 4.037 12 C -0.030 4.030 13 N -0.160 5.160 14 C 0.015 3.985 15 C -0.318 4.318 16 C 0.282 3.718 17 O -0.430 6.430 18 C -0.318 4.318 19 C 0.015 3.985 20 H 0.079 0.921 21 H 0.024 0.976 22 H 0.019 0.981 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.181 0.819 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 12.231 -7.100 0.014 14.142 hybrid contribution 0.360 1.275 -0.014 1.325 sum 12.591 -5.825 -0.001 13.873 Atomic orbital electron populations 1.69863 1.06076 1.27360 1.49531 1.24754 0.94819 0.98790 0.94378 0.86861 0.80302 0.83722 0.78920 1.19782 1.20547 1.19153 1.20827 0.87925 0.95483 1.52224 0.89819 1.20674 0.96382 0.78496 0.94740 1.87863 1.15909 1.30645 1.95184 1.22608 0.86214 0.94232 1.00683 1.22090 0.75625 0.98517 1.06767 1.43215 1.08512 1.59474 1.04791 1.21910 0.93961 0.93577 0.89048 1.22470 0.93368 1.14203 1.01727 1.17283 0.89393 0.76231 0.88880 1.90777 1.15084 1.46767 1.90330 1.22467 0.93345 1.14219 1.01734 1.21909 0.93977 0.93578 0.89027 0.92122 0.97618 0.98061 0.93459 0.93453 0.87539 0.87541 0.81884 0.83707 0.83707 0.81886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 20.24 27.47 -169.99 -4.67 15.57 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.53 -14.65 9.99 -34.44 -0.34 -14.99 16 8 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.17 3.97 4.76 36.01 0.17 4.14 16 10 O -0.38 -7.45 10.33 -35.23 -0.36 -7.82 16 11 C 0.04 0.56 6.26 37.16 0.23 0.79 16 12 C 0.09 0.86 5.92 -4.04 -0.02 0.83 16 13 N -0.47 -4.32 2.60 -117.42 -0.31 -4.62 16 14 C 0.14 1.28 10.25 -17.00 -0.17 1.11 16 15 C -0.29 -3.38 10.01 -39.46 -0.39 -3.78 16 16 C 0.39 5.67 6.77 -37.11 -0.25 5.42 16 17 O -0.54 -10.18 17.89 4.70 0.08 -10.10 16 18 C -0.29 -3.38 10.01 -39.46 -0.39 -3.78 16 19 C 0.14 1.28 10.25 -17.01 -0.17 1.11 16 20 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.01 0.14 7.20 -51.93 -0.37 -0.24 16 22 H 0.00 0.04 7.57 -51.93 -0.39 -0.36 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.11 0.88 8.00 -51.93 -0.42 0.46 16 26 H 0.11 0.88 7.99 -51.93 -0.42 0.46 16 27 H 0.16 0.99 8.02 -52.49 -0.42 0.57 16 28 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.16 0.99 8.02 -52.49 -0.42 0.57 16 LS Contribution 268.26 15.07 4.04 4.04 Total: -1.00 -34.00 268.26 -5.61 -39.61 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: -3.72 Total: -4.08 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.45 Total: -7.14 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.47 Total: -30.09 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.28 Total: -17.92 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.00 -5.61 -39.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385202581.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.088 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds