Wall clock time and date at job start Mon Mar 30 2020 03:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00263 * 2 1 4 4 H 1.48495 * 109.47651 * 270.00344 * 3 2 1 5 5 H 1.48510 * 109.47084 * 30.00288 * 3 2 1 6 6 H 1.48503 * 109.47210 * 149.99915 * 3 2 1 7 7 C 1.37882 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00181 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 O 1.42902 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00121 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47155 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47140 * 180.02562 * 12 11 10 14 14 C 1.35601 * 119.26029 * 270.27668 * 13 12 11 15 15 C 1.35095 * 120.69774 * 180.29172 * 14 13 12 16 16 C 1.41489 * 119.24450 * 359.43431 * 15 14 13 17 17 O 1.22239 * 120.68333 * 180.29939 * 16 15 14 18 18 C 1.41489 * 118.63676 * 0.28549 * 16 15 14 19 19 C 1.35089 * 119.24362 * 359.97438 * 18 16 15 20 20 H 0.97003 * 119.99368 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47140 * 59.99831 * 9 7 2 22 22 H 1.09005 * 109.47250 * 300.00211 * 9 7 2 23 23 H 1.08998 * 109.47006 * 59.99699 * 11 10 9 24 24 H 1.09003 * 109.46917 * 300.00350 * 11 10 9 25 25 H 1.09000 * 109.46635 * 59.99871 * 12 11 10 26 26 H 1.08998 * 109.47103 * 299.99858 * 12 11 10 27 27 H 1.08000 * 119.65966 * 0.02584 * 14 13 12 28 28 H 1.08002 * 120.38235 * 179.71828 * 15 14 13 29 29 H 1.07995 * 120.37518 * 180.02562 * 18 16 15 30 30 H 1.08002 * 119.65224 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 8 3.9878 -2.5415 -0.0010 11 6 5.4123 -2.6544 -0.0009 12 6 5.8068 -4.1327 -0.0002 13 7 7.2672 -4.2484 0.0005 14 6 7.9289 -4.2955 -1.1822 15 6 9.2747 -4.4080 -1.2155 16 6 9.9940 -4.4644 0.0017 17 8 11.2126 -4.5606 0.0022 18 6 9.2738 -4.4070 1.2182 19 6 7.9276 -4.2999 1.1837 20 1 -0.4849 0.8401 0.0004 21 1 3.8752 -0.6806 0.8888 22 1 3.8746 -0.6801 -0.8911 23 1 5.8151 -2.1708 0.8890 24 1 5.8151 -2.1709 -0.8910 25 1 5.4039 -4.6166 -0.8899 26 1 5.4040 -4.6157 0.8901 27 1 7.3739 -4.2470 -2.1074 28 1 9.7962 -4.4496 -2.1604 29 1 9.7944 -4.4474 2.1635 30 1 7.3713 -4.2551 2.1084 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385202581.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:04 Heat of formation + Delta-G solvation = -70.403604 kcal Electronic energy + Delta-G solvation = -14290.155736 eV Core-core repulsion = 11664.323463 eV Total energy + Delta-G solvation = -2625.832274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.97159 -39.23185 -38.44702 -34.97737 -33.95781 -32.72027 -30.80622 -28.98384 -24.81327 -24.61843 -23.95499 -23.22261 -19.11972 -18.59726 -18.25632 -17.46509 -16.97273 -16.83680 -16.68615 -15.97265 -15.38804 -15.04040 -14.95940 -14.58134 -14.39567 -13.78782 -13.58452 -13.37028 -13.00044 -12.91290 -12.32371 -12.25246 -11.84988 -11.40952 -10.94581 -10.66383 -10.45078 -10.42083 -9.03637 -8.38073 -6.46429 0.33831 0.37209 1.34940 1.36362 1.44466 1.47174 2.28181 2.77063 2.95402 3.05399 3.63236 3.69993 3.96171 4.00313 4.05800 4.25954 4.34953 4.52547 4.56727 4.70116 4.80353 4.85478 4.97434 5.04917 5.41448 5.54423 5.76717 5.90025 5.95600 6.56393 6.66144 7.12618 7.18006 8.78570 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.057240 B = 0.004666 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.050293 B = 5999.597400 C = 6172.316389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.244 1.244 7 C -0.547 4.547 8 H 0.036 0.964 9 C 0.181 3.819 10 O -0.397 6.397 11 C 0.032 3.968 12 C 0.102 3.898 13 N -0.463 5.463 14 C 0.165 3.835 15 C -0.317 4.317 16 C 0.363 3.637 17 O -0.610 6.610 18 C -0.317 4.317 19 C 0.165 3.835 20 H 0.273 0.727 21 H 0.015 0.985 22 H 0.014 0.986 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.202 0.798 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.248 -6.269 -0.007 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.167 1.167 7 C -0.585 4.585 8 H 0.055 0.945 9 C 0.106 3.894 10 O -0.316 6.316 11 C -0.046 4.046 12 C -0.019 4.019 13 N -0.149 5.149 14 C 0.037 3.963 15 C -0.341 4.341 16 C 0.262 3.738 17 O -0.505 6.505 18 C -0.341 4.341 19 C 0.037 3.963 20 H 0.082 0.918 21 H 0.033 0.967 22 H 0.032 0.968 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.219 0.781 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 12.315 -6.355 -0.005 13.858 hybrid contribution 0.177 0.936 -0.010 0.953 sum 12.492 -5.419 -0.014 13.616 Atomic orbital electron populations 1.70023 1.08269 1.28783 1.50920 1.25780 0.95695 1.03259 0.93554 0.85682 0.79517 0.77875 0.79721 1.18530 1.20252 1.16741 1.21167 0.90962 0.93960 1.52397 0.94536 1.20341 0.93197 0.80455 0.95438 1.87790 1.19865 1.28603 1.95366 1.22928 0.82786 0.97309 1.01568 1.22075 0.75074 0.95933 1.08857 1.43420 1.08712 1.57749 1.05022 1.22376 0.93151 0.90466 0.90296 1.22425 0.94520 1.16259 1.00849 1.17948 0.89005 0.75704 0.91109 1.90736 1.17471 1.51068 1.91224 1.22422 0.94495 1.16277 1.00861 1.22373 0.93171 0.90473 0.90275 0.91809 0.96745 0.96815 0.92645 0.92546 0.85644 0.85671 0.78075 0.83443 0.83450 0.78094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.22 13.96 21.45 0.30 -55.92 16 2 C 0.02 0.86 5.47 84.66 0.46 1.33 16 3 Si 0.95 40.33 27.47 68.60 1.88 42.22 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.24 -9.39 6.54 99.48 0.65 -8.74 16 7 C -0.55 -30.47 9.99 25.60 0.26 -30.21 16 8 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 9 C 0.18 7.91 4.76 71.24 0.34 8.25 16 10 O -0.40 -14.57 10.33 -148.98 -1.54 -16.11 16 11 C 0.03 0.72 6.26 71.98 0.45 1.18 16 12 C 0.10 1.38 5.92 86.38 0.51 1.89 16 13 N -0.46 -6.41 2.60 -525.39 -1.37 -7.78 16 14 C 0.16 2.37 10.25 83.39 0.86 3.23 16 15 C -0.32 -6.97 10.01 22.35 0.22 -6.74 16 16 C 0.36 10.79 6.77 23.87 0.16 10.95 16 17 O -0.61 -24.44 17.89 -6.10 -0.11 -24.55 16 18 C -0.32 -6.98 10.01 22.35 0.22 -6.75 16 19 C 0.16 2.38 10.25 83.39 0.85 3.23 16 20 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 21 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 22 H 0.01 0.58 7.57 -2.38 -0.02 0.56 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.13 1.38 8.00 -2.39 -0.02 1.36 16 26 H 0.13 1.38 7.99 -2.39 -0.02 1.36 16 27 H 0.20 1.39 8.02 -2.91 -0.02 1.36 16 28 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 29 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.20 1.40 8.02 -2.91 -0.02 1.37 16 Total: -1.00 -78.20 268.26 4.57 -73.63 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.06 Total: 2.16 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 4.34 Total: -13.65 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -1.07 Total: -63.71 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -1.65 Total: -40.66 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 1.88 Total: 42.22 kcal Total: -78.20 4.57 -73.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385202581.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.229 kcal (2) G-P(sol) polarization free energy of solvation -78.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds