Wall clock time and date at job start Mon Mar 30 2020 02:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47152 * 239.99846 * 3 2 1 5 5 H 1.48495 * 109.47327 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47303 * 120.00116 * 3 2 1 7 7 C 1.37878 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00301 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00110 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.42893 * 113.99872 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47196 * 180.02562 * 11 10 9 13 13 N 1.46507 * 109.47241 * 65.00166 * 12 11 10 14 14 C 1.35763 * 119.62574 * 90.00014 * 13 12 11 15 15 C 1.35346 * 120.69997 * 180.27933 * 14 13 12 16 16 C 1.40202 * 119.94860 * 359.43664 * 15 14 13 17 17 C 1.36395 * 119.26120 * 0.57668 * 16 15 14 18 18 C 1.34664 * 119.61981 * 270.02413 * 13 12 11 19 19 O 1.22055 * 119.98569 * 359.97438 * 18 13 12 20 20 H 0.96996 * 119.99734 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47046 * 59.99544 * 9 7 2 22 22 H 1.08999 * 109.47173 * 299.99936 * 9 7 2 23 23 H 1.08995 * 109.47467 * 59.99958 * 11 10 9 24 24 H 1.09003 * 109.47454 * 299.99932 * 11 10 9 25 25 H 1.08991 * 109.47264 * 305.00242 * 12 11 10 26 26 H 1.09001 * 109.47142 * 184.99878 * 12 11 10 27 27 H 1.08002 * 119.64669 * 359.97438 * 14 13 12 28 28 H 1.07996 * 120.02410 * 179.69320 * 15 14 13 29 29 H 1.08002 * 120.36615 * 180.31976 * 16 15 14 30 30 H 1.08002 * 120.34395 * 179.74309 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6479 -5.9563 0.0017 13 7 3.4059 -5.8875 1.2536 14 6 2.9974 -6.6128 2.3261 15 6 3.6780 -6.5613 3.4949 16 6 4.8245 -5.7615 3.6025 17 6 5.2330 -5.0332 2.5240 18 6 4.4995 -5.1052 1.3274 19 8 4.8541 -4.4591 0.3546 20 1 -0.4849 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5568 0.8903 23 1 0.9446 -4.9827 -0.8886 24 1 0.9451 -4.9822 0.8914 25 1 3.3215 -5.7961 -0.8400 26 1 2.1819 -6.9376 -0.0874 27 1 2.1173 -7.2338 2.2473 28 1 3.3406 -7.1390 4.3426 29 1 5.3757 -5.7194 4.5303 30 1 6.1113 -4.4081 2.5888 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385229044.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:49 Heat of formation + Delta-G solvation = -47.193695 kcal Electronic energy + Delta-G solvation = -15027.821658 eV Core-core repulsion = 12402.995842 eV Total energy + Delta-G solvation = -2624.825816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.95720 -36.82555 -36.45163 -34.38982 -32.62054 -29.88745 -29.25980 -26.89502 -24.13531 -23.14864 -22.23612 -21.52701 -17.39839 -17.01901 -16.41207 -16.10862 -15.45045 -15.39567 -14.77858 -14.34419 -13.94330 -13.82661 -13.22529 -12.44315 -12.19129 -12.08466 -11.71581 -11.57187 -11.31819 -10.83023 -10.77837 -10.70928 -10.10750 -9.73493 -9.46637 -9.06766 -8.80373 -8.15165 -7.66463 -6.06224 -4.06642 1.06787 2.17906 2.93157 3.37697 3.38696 3.44756 4.00195 4.37567 4.63263 4.66921 4.94902 5.15336 5.30280 5.32195 5.39445 5.42525 5.55614 5.78126 5.90539 6.08630 6.18782 6.32165 6.44910 6.76803 7.07719 7.41065 7.43222 7.86723 8.19240 8.50876 8.60193 9.07891 9.57892 11.05540 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.007179 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.404470 B = 3899.323994 C = 4240.587986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.196 3.804 10 O -0.377 6.377 11 C 0.045 3.955 12 C 0.093 3.907 13 N -0.490 5.490 14 C 0.136 3.864 15 C -0.246 4.246 16 C -0.028 4.028 17 C -0.237 4.237 18 C 0.514 3.486 19 O -0.520 6.520 20 H 0.264 0.736 21 H 0.004 0.996 22 H 0.002 0.998 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -15.829 6.281 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.086 0.914 9 C 0.121 3.879 10 O -0.296 6.296 11 C -0.034 4.034 12 C -0.028 4.028 13 N -0.201 5.201 14 C 0.008 3.992 15 C -0.270 4.270 16 C -0.049 4.049 17 C -0.259 4.259 18 C 0.314 3.686 19 O -0.399 6.399 20 H 0.073 0.927 21 H 0.022 0.978 22 H 0.020 0.980 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.124 0.876 26 H 0.114 0.886 27 H 0.173 0.827 28 H 0.156 0.844 29 H 0.146 0.854 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.481 -15.222 5.568 16.817 hybrid contribution -0.177 0.836 0.206 0.879 sum 4.305 -14.386 5.774 16.088 Atomic orbital electron populations 1.69959 1.06087 1.27178 1.50979 1.24940 0.94973 0.99409 0.95200 0.86384 0.79292 0.81791 0.78976 1.19945 1.21176 1.20000 1.21048 0.94233 0.89239 1.50306 0.91429 1.20198 0.88722 0.83859 0.95092 1.88073 1.34404 1.12079 1.95037 1.22603 0.93839 0.87005 0.99929 1.22103 0.95186 0.98919 0.86632 1.45532 1.24941 1.37441 1.12225 1.21887 0.97603 0.92806 0.86936 1.20500 1.00325 1.08267 0.97884 1.21321 0.93985 0.91662 0.97958 1.22166 1.04137 1.06109 0.93490 1.17068 0.80532 0.80406 0.90554 1.91013 1.67988 1.42414 1.38475 0.92694 0.97779 0.98024 0.92784 0.94309 0.87634 0.88573 0.82700 0.84370 0.85401 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.91 22.99 29.54 -169.99 -5.02 17.97 16 4 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.51 -15.96 9.43 -34.44 -0.32 -16.28 16 8 H 0.07 2.17 7.81 -52.49 -0.41 1.76 16 9 C 0.20 5.62 5.69 36.01 0.20 5.83 16 10 O -0.38 -9.66 9.07 -43.86 -0.40 -10.06 16 11 C 0.04 0.82 6.28 37.16 0.23 1.06 16 12 C 0.09 1.35 5.79 -4.04 -0.02 1.33 16 13 N -0.49 -7.59 2.57 -119.77 -0.31 -7.89 16 14 C 0.14 1.53 10.28 -16.84 -0.17 1.36 16 15 C -0.25 -2.57 10.01 -39.88 -0.40 -2.97 16 16 C -0.03 -0.33 10.10 -39.51 -0.40 -0.73 16 17 C -0.24 -3.70 9.99 -39.38 -0.39 -4.10 16 18 C 0.51 9.81 7.02 -15.44 -0.11 9.70 16 19 O -0.52 -12.40 15.82 -3.76 -0.06 -12.46 16 20 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 21 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 22 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.11 1.72 7.39 -51.93 -0.38 1.34 16 26 H 0.10 0.89 8.01 -51.93 -0.42 0.48 16 27 H 0.16 1.10 8.04 -52.49 -0.42 0.68 16 28 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.14 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 267.97 15.07 4.04 4.04 Total: -1.00 -37.46 267.97 -6.22 -43.68 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: -3.73 Total: -4.92 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.48 Total: -3.23 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.43 Total: -35.01 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.46 Total: -22.52 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -37.46 -6.22 -43.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385229044.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.514 kcal (2) G-P(sol) polarization free energy of solvation -37.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds